Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 0.0e+00 1486.9 751 100.0
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1229.9 751 82.6
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1142.9 765 74.8
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1123.2 756 74.5
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1110.1 768 73.0
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1109.4 767 72.4
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1107.4 752 72.9
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1102.0 747 73.4
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 755 72.5
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1099.3 764 71.9
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1092.0 753 72.9
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1087.8 764 72.3
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1085.1 767 70.8
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1085.1 751 72.2
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1084.7 753 75.0
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1078.9 753 71.2
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1075.8 779 70.7
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 2.1e-311 1072.0 756 72.0
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.6e-311 1071.2 762 73.0
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 3.6e-311 1071.2 752 71.7
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.5e-309 1065.1 757 70.8
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.2e-308 1062.8 760 70.1
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 2.1e-308 1062.0 752 70.9
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 4.0e-307 1057.7 766 69.5
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 4.0e-307 1057.7 755 69.9
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 5.3e-307 1057.4 758 70.8
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 6.9e-307 1057.0 758 70.7
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 9.0e-307 1056.6 756 70.1
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.0e-306 1055.4 766 69.3
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 2.6e-306 1055.0 767 69.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 3.4e-306 1054.7 750 68.9
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 4.4e-306 1054.3 751 70.8
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 4.4e-306 1054.3 742 70.5
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 5.8e-306 1053.9 753 70.3
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 2.2e-305 1052.0 752 69.8
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 2.9e-305 1051.6 753 70.3
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 3.2e-304 1048.1 762 69.6
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 5.4e-304 1047.3 758 70.1
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 7.1e-304 1047.0 760 70.7
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 9.3e-304 1046.6 751 72.7
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 1.6e-303 1045.8 750 69.3
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 7.8e-303 1043.5 752 70.5
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 6.6e-302 1040.4 749 69.7
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 8.7e-302 1040.0 755 68.6
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 5.6e-301 1037.3 751 69.0
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 6.2e-300 1033.9 769 67.0
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 4.5e-298 1027.7 761 67.9
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 5.8e-298 1027.3 766 67.9
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-296 1022.7 757 69.1
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.9e-296 1022.3 742 69.7
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.7e-295 1018.5 760 68.3
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 2.3e-294 1015.4 760 67.8
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 8.7e-294 1013.4 783 67.6
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 8.7e-294 1013.4 754 66.8
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 9.6e-293 1010.0 756 68.4
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 2.8e-292 1008.4 762 67.5
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.2e-290 1003.0 751 67.4
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.9e-288 995.7 805 65.3
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 6.0e-287 990.7 767 66.9
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 1.8e-286 989.2 761 67.8
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 2.3e-286 988.8 767 66.8
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 4.8e-284 981.1 757 66.4
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 6.2e-284 980.7 757 66.2
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 6.9e-283 977.2 775 66.8
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.7e-281 972.6 755 66.2
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 6.5e-281 970.7 780 65.5
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.2e-280 968.4 762 65.9
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 2.1e-279 965.7 755 66.1
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 2.1e-279 965.7 759 64.8
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 2.1e-279 965.7 759 64.8
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.7e-279 965.3 757 65.1
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 5.1e-278 961.1 755 65.2
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 1.1e-275 953.4 781 63.1
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.4e-274 948.3 754 66.0
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 4.5e-274 948.0 755 64.5
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 1.3e-273 946.4 751 63.8
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.1e-271 939.1 757 63.7
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 3.0e-270 935.3 729 65.0
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.3e-268 929.9 917 55.7
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 3.7e-268 928.3 750 62.9
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.3e-265 919.8 751 64.0
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 8.5e-265 917.1 759 62.7
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.6e-263 912.9 521 82.3
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 2.1e-263 912.5 744 62.9
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 7.9e-263 910.6 511 83.4
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 8.8e-262 907.1 756 62.3
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 3.7e-260 901.7 672 68.3
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 1.8e-259 899.4 744 63.0
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 9.4e-256 887.1 511 81.6
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.8e-244 849.0 746 59.8
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 2.4e-243 845.9 691 62.7
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.7e-242 842.4 635 68.7
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 6.8e-238 827.8 755 59.5
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 4.7e-231 805.1 741 57.9
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 2.3e-230 802.7 630 64.6
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 4.0e-230 802.0 759 56.4
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 1.2e-221 773.9 815 51.0
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.2e-221 773.9 834 50.8
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 2.1e-207 726.5 756 50.7
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 3.4e-205 719.2 737 53.5
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.8e-198 696.8 734 52.6
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-196 690.6 742 51.9
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.2e-194 684.1 743 51.7
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.6e-194 683.7 742 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 5.1e-193 678.7 720 50.3
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.1e-190 671.0 758 51.6
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 9.0e-190 667.9 636 52.8
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 7.9e-170 601.7 334 83.5
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.0e-149 533.9 454 64.8
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 7.0e-126 455.7 414 56.0
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.4e-121 441.4 456 55.0
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 9.2e-110 402.1 227 85.0
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 8.1e-98 362.5 238 73.9
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.9e-91 341.3 182 88.5
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 1.2e-90 338.6 541 36.6
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 1.6e-90 338.2 709 31.7
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 7.3e-75 286.2 515 33.2
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 4.3e-59 233.8 365 44.4
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.4e-57 228.8 275 49.1
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.2e-56 225.7 134 78.4
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.6e-53 215.3 237 52.3
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.1e-53 214.9 168 64.9
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 2.7e-53 214.5 237 52.3
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.0e-52 211.1 121 83.5
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 7.4e-51 206.5 169 69.8
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 2.5e-46 191.4 126 73.0
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 8.7e-44 183.0 107 79.4
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.1e-37 161.8 209 46.9
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.3e-34 152.5 183 51.4
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.6e-27 128.3 148 46.6
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 7.0e-25 120.2 90 66.7
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.1e-17 94.4 80 60.0
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 7.0e-17 93.6 66 65.2
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 2.2e-15 88.6 62 66.1
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 2.9e-15 88.2 131 48.9
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 9.4e-14 83.2 148 37.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 9.4e-14 83.2 531 20.5
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.1e-13 82.0 498 22.9
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 2.6e-11 75.1 477 21.6
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 8.3e-10 70.1 59 55.9
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 5.4e-09 67.4 499 22.2
Pp3c1_23160 Physcomitrium patens HOM05D002279 ORTHO05D002644 1.6e-08 65.9 464 19.6
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 4.5e-08 64.3 560 20.4
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 4.5e-08 64.3 404 21.0
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 4.5e-08 64.3 415 21.2
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 1.7e-07 62.4 337 21.4
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 2.3e-07 62.0 589 19.4
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 3.8e-07 61.2 90 41.1
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 3.8e-07 61.2 472 18.6
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 5.0e-07 60.8 338 21.6
Ciclev10014087m.g Citrus clementina HOM05D002279 ORTHO05D002644 6.5e-07 60.5 340 20.3
Pp3c2_14560 Physcomitrium patens HOM05D002279 ORTHO05D002644 6.5e-07 60.5 448 19.0
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 1.1e-06 59.7 39 69.2
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 1.5e-06 59.3 107 38.3
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 1.5e-06 59.3 107 38.3
Gorai.009G157800 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.9e-06 58.9 360 19.2
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 2.5e-06 58.5 106 37.7
Aqoxy1G01865 Aquilegia oxysepala HOM05D001971 ORTHO05D003057 4.2e-06 57.8 189 24.9
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 4.2e-06 57.8 104 38.5
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 5.5e-06 57.4 63 46.0
Gohir.D05G153500 Gossypium hirsutum HOM05D002279 ORTHO05D002644 9.5e-06 56.6 360 19.2


User provided reference genes

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