Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 0.0e+00 2479.1 1377 100.0
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1582.8 1476 65.0
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1554.7 1470 63.5
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1270.8 1438 57.4
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 8.2e-306 1054.3 1513 49.3
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 1.8e-300 1036.6 1453 49.1
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 1.3e-298 1030.4 1263 54.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 6.5e-295 1018.1 1487 49.1
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 2.0e-288 996.5 1475 48.4
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 4.5e-288 995.3 1476 48.5
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 1.3e-287 993.8 1496 47.2
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 1.7e-287 993.4 1483 47.9
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 3.6e-285 985.7 1470 47.3
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 1.5e-283 980.3 1467 46.9
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 1.4e-281 973.8 1555 45.5
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 2.4e-281 973.0 1477 47.8
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 4.1e-281 972.2 1427 47.4
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 8.5e-279 964.5 1471 46.9
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 3.2e-278 962.6 1491 47.0
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 1.4e-276 957.2 1467 47.5
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 4.7e-269 932.2 1448 45.3
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 2.6e-267 926.4 1480 45.3
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 3.3e-267 926.0 1486 46.4
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 2.8e-266 922.9 1403 47.1
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 7.0e-265 918.3 1434 45.1
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 4.5e-264 915.6 1420 47.3
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 5.9e-264 915.2 1463 47.3
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 6.5e-263 911.8 1476 46.4
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 1.5e-262 910.6 1432 46.4
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 1.4e-260 904.0 1496 45.0
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 1.4e-260 904.0 1490 44.8
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 3.0e-260 902.9 1474 44.8
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 6.8e-260 901.7 1470 45.1
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 1.2e-259 901.0 1487 44.8
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 1.3e-258 897.5 1394 45.8
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 6.3e-258 895.2 1469 44.9
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 1.1e-257 894.4 1477 44.8
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.1e-257 894.4 1413 46.8
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 3.1e-257 892.9 1481 45.8
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 5.4e-257 892.1 1431 45.4
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 2.0e-256 890.2 1544 42.9
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 3.5e-256 889.4 1487 45.7
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 6.5e-255 885.2 1507 45.6
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 9.5e-254 881.3 1462 44.7
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 1.2e-253 880.9 1465 44.2
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 1.4e-252 877.5 1495 44.4
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 4.0e-252 875.9 1586 41.9
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 8.9e-252 874.8 1482 44.0
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 2.8e-250 869.8 1454 44.8
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 3.7e-250 869.4 1465 44.1
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 1.4e-249 867.5 1456 45.1
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.1e-249 865.9 1162 50.9
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 1.7e-247 860.5 1481 43.8
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 5.0e-247 859.0 1362 46.8
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 6.6e-247 858.6 1480 44.3
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 8.6e-247 858.2 1453 44.6
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 3.3e-246 856.3 1485 43.4
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 1.2e-245 854.4 1363 46.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 8.0e-245 851.7 1471 43.6
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 1.8e-244 850.5 1471 43.7
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 1.8e-244 850.5 1274 47.8
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 1.8e-244 850.5 1484 43.3
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.3e-244 850.1 1471 43.6
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 2.7e-240 836.6 1331 46.0
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 1.1e-238 831.2 1405 43.7
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 4.0e-236 822.8 1357 47.0
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 8.9e-236 821.6 1132 51.1
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 2.5e-222 776.9 1160 48.2
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 3.6e-213 746.5 958 53.5
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 2.0e-211 740.7 1140 46.9
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 4.9e-210 736.1 896 55.1
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 3.2e-209 733.4 947 52.9
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 2.1e-205 720.7 939 53.1
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 6.2e-205 719.2 943 52.4
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 8.1e-197 692.2 678 62.4
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 2.5e-190 670.6 936 51.8
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 2.9e-186 657.1 1593 35.8
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 4.3e-182 643.3 1003 50.0
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 4.8e-181 639.8 809 51.5
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.6e-176 624.8 669 59.5
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 3.0e-175 620.5 678 56.6
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 8.0e-152 542.7 858 47.2
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.4e-148 531.9 1252 38.2
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 1.8e-148 531.6 798 50.3
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.3e-122 445.7 541 53.2
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 3.6e-112 411.0 1061 33.9
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.8e-101 374.4 588 45.4
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 4.2e-100 370.9 710 38.0
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.2e-88 330.5 755 38.4
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 1.4e-87 329.3 767 36.9
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.0e-61 243.4 353 46.7
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 4.1e-47 194.9 730 30.3
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 1.7e-45 189.5 524 34.2
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 1.8e-42 179.5 465 34.0
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 2.7e-35 155.6 193 49.2
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 5.7e-33 147.9 124 62.9
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-29 137.1 294 34.0
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.4e-25 122.1 151 54.3
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-24 118.6 110 58.2
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.6e-21 107.8 270 32.6
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.2e-14 87.0 113 47.8
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.6e-14 86.7 59 69.5
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 1.1e-12 80.5 57 63.2
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 7.5e-09 67.8 149 40.3


User provided reference genes

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