Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 3836.6 1977 100.0
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2845.8 2095 71.4
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 2831.6 2019 73.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 2415.2 1952 65.0
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2202.9 1986 59.6
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2019.6 1985 53.9
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1952.6 1987 53.7
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1928.7 1979 53.4
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1924.4 1986 52.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1920.6 1979 52.7
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1920.2 1978 52.7
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1896.7 2009 51.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1889.4 1989 51.2
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1889.0 1986 51.8
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1887.1 1990 51.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1883.2 1978 52.3
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1878.6 1983 51.7
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1877.8 2008 51.9
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1874.8 1982 51.6
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1864.4 1981 50.8
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1852.8 1972 50.7
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1850.9 2062 50.0
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1833.9 1990 50.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1828.1 1980 50.9
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1827.8 1981 50.5
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1823.5 1983 50.5
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1805.4 1972 49.9
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1798.1 2006 50.1
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1795.8 2079 48.9
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1778.5 1986 49.8
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1773.8 1986 48.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1772.7 1983 49.3
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1763.0 2195 46.0
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1762.7 1974 48.5
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1754.2 1233 74.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1753.0 1977 48.4
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1742.6 1975 48.7
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1739.9 2047 47.8
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1737.6 1982 48.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1734.9 1982 48.1
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1729.9 1980 49.2
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1726.1 1971 48.7
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1714.1 1976 47.9
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1713.0 1998 47.3
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1711.0 1983 48.0
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1706.4 2062 46.6
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1704.1 1788 51.5
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1693.3 1990 48.9
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1692.2 1990 48.9
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1687.5 1982 48.0
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1684.5 1988 46.8
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1681.4 1979 47.2
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1675.2 1976 47.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1668.7 1998 47.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1662.9 2071 45.8
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1661.7 1981 46.3
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1650.6 1982 46.6
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1640.6 1977 46.5
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1624.4 1981 46.4
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1624.4 1980 46.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1621.3 1979 46.7
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1619.0 1976 46.0
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1618.6 1979 45.7
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1617.8 1979 45.9
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1614.4 1979 46.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1610.5 1976 46.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1607.4 2027 45.3
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1583.5 2195 42.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1577.8 1831 47.8
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1565.1 1997 44.7
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1556.6 1970 45.1
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1509.2 2024 43.2
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1489.2 1743 47.4
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1477.6 1982 43.5
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1445.3 1987 43.1
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1416.0 1993 41.8
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1318.1 1979 40.7
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1227.2 1393 49.5
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1203.3 1504 46.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1174.1 1401 47.9
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1167.1 2327 35.8
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1122.5 1262 50.3
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1079.7 1386 46.2
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 4.9e-296 1022.3 2015 34.6
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 7.7e-273 945.3 2065 31.1
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.0e-261 908.3 2019 30.6
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 5.3e-250 869.4 1225 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 5.4e-242 842.8 2094 29.2
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.7e-224 784.6 1101 42.1
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.8e-222 777.3 789 51.2
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 6.6e-208 729.6 1018 42.0
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.3e-203 715.3 586 61.3
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.7e-200 704.9 712 53.7
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 1.7e-195 688.3 651 56.1
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.7e-187 661.8 1342 35.1
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 9.0e-181 639.4 1479 29.5
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.3e-173 613.6 740 44.9
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.8e-172 610.1 843 41.0
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.3e-163 582.4 740 43.1
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 5.0e-155 553.9 475 59.8
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 8.8e-152 543.1 729 42.8
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 1.0e-147 529.6 717 40.4
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.1e-141 509.6 2186 23.4
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.1e-121 440.7 793 38.6
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-114 419.9 514 45.9
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.1e-109 401.4 770 36.2
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.8e-104 386.0 506 43.5
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 3.2e-101 375.2 419 52.0
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.2e-100 373.2 335 54.6
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 3.7e-94 351.7 596 36.9
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-93 349.4 734 34.2
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.4e-93 349.0 387 48.8
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.7e-86 326.2 659 35.7
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.6e-74 284.6 637 31.4
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 8.7e-67 260.8 199 63.3
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.5e-66 259.2 232 54.7
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 6.5e-54 218.0 470 29.4
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 6.0e-52 211.5 150 65.3
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 7.9e-44 184.5 196 50.0
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.0e-38 167.5 130 62.3
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.6e-36 159.1 350 35.7
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.8e-35 154.5 404 30.0
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.7e-33 149.1 112 67.9
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.0e-30 141.0 148 44.6
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.3e-30 140.6 207 43.5
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 2.9e-30 139.4 130 52.3
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.8e-27 130.2 581 25.5
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.3e-27 129.8 128 51.6
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-26 127.5 100 62.0
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.8e-22 112.5 91 57.1
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 4.2e-21 109.0 152 38.8
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-19 104.0 124 42.7
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.0e-19 102.4 692 23.3
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 2.6e-18 99.8 91 52.7
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.3e-17 97.4 88 52.3
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.7e-17 95.9 91 58.2
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.5e-15 89.0 146 37.0
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 4.5e-15 89.0 107 43.0
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.3e-14 87.4 98 46.9
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.3e-14 87.4 68 61.8
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 6.5e-14 85.1 169 32.5
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.1e-13 84.3 83 53.0
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 1.1e-13 84.3 68 55.9
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 3.2e-13 82.8 128 32.8
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.2e-12 80.9 145 33.1
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.2e-12 80.9 51 68.6
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.7e-12 79.7 188 29.3
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 8.8e-11 74.7 125 32.8
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.6e-10 73.2 115 37.4
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 9.8e-10 71.2 69 49.3
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 3.7e-09 69.3 80 42.5
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.4e-08 67.4 50 62.0
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 2.7e-07 63.2 163 30.7
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 3.5e-07 62.8 179 30.2
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 7.7e-07 61.6 59 54.2
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.0e-06 61.2 148 33.8
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 2.3e-06 60.1 108 38.0
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 2.9e-06 59.7 52 48.1


User provided reference genes

Program Settings