Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g016810 Amaranthus hybridus HOM05D003402 ORTHO05D003939 9.1e-66 253.4 130 100.0
Ah.01g016790 Amaranthus hybridus HOM05D003402 ORTHO05D003939 1.3e-43 179.9 129 73.6
Duzib213G0004 Durio zibethinus HOM05D003402 ORTHO05D003939 1.2e-41 173.3 129 70.5
Duzib170G0574 Durio zibethinus HOM05D003402 ORTHO05D003939 4.6e-41 171.4 129 69.8
QL08p001639 Quercus lobata HOM05D003402 ORTHO05D003939 6.0e-41 171.0 129 68.2
Cfa016938 Carpinus fangiana HOM05D003402 ORTHO05D003939 7.8e-41 170.6 129 67.4
Lalb_Chr20g0115311 Lupinus albus HOM05D003402 ORTHO05D003939 7.8e-41 170.6 129 69.8
Eucgr.K00301 Eucalyptus grandis HOM05D003402 ORTHO05D003939 1.0e-40 170.2 129 69.8
Manes.03G143100 Manihot esculenta HOM05D003402 ORTHO05D003939 1.0e-40 170.2 129 69.8
arahy.Tifrunner.gnm1.ann1.YUWQ2H Arachis hypogaea HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 69.0
Haze_09893 Corylus avellana HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 66.7
Gorai.009G453200 Gossypium raimondii HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 69.0
Lalb_Chr15g0082451 Lupinus albus HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 68.2
Potri.001G469200 Populus trichocarpa HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 68.2
Thecc.07G005500 Theobroma cacao HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 69.0
TWI73G0622 Tripterygium wilfordii HOM05D003402 ORTHO05D003939 1.3e-40 169.9 129 68.2
Gohir.A13G130156 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.7e-40 169.5 129 68.2
Gohir.D05G386500 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.7e-40 169.5 129 69.0
Potri.011G166000 Populus trichocarpa HOM05D003402 ORTHO05D003939 1.7e-40 169.5 129 67.4
Sabra16G0318200 Salix brachista HOM05D003402 ORTHO05D003939 1.7e-40 169.5 129 68.2
Atru.chr1.1993 Acer truncatum HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 69.0
Cpa.g.sc19.128 Carica papaya HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 68.2
COL.COLO4_07759 Corchorus olitorius HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 68.2
CsaV3_5G000960 Cucumis sativus L. HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 69.0
MD03G1039400 Malus domestica HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 68.2
Manes.05G206500 Manihot esculenta HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 68.2
SGA_v2.0_scaffold45G17223 Striga asiatica HOM05D003402 ORTHO05D003939 2.3e-40 169.1 129 67.4
CiPaw.11G208600 Carya illinoinensis HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 67.4
ClCG01G000820 Citrullus lanatus HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 69.0
ClCG10G004100 Citrullus lanatus HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 69.0
Ciclev10029250m.g Citrus clementina HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 68.2
Ciclev10032222m.g Citrus clementina HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 67.4
Lj5g0012042 Lotus japonicus HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 68.2
Peaxi162Scf00359g10124 Petunia axillaris HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 69.0
Sed0010383 Sechium edule HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 69.0
Sed0014715 Sechium edule HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 69.0
Sed0017285 Sechium edule HOM05D003402 ORTHO05D003939 3.0e-40 168.7 129 69.0
arahy.Tifrunner.gnm1.ann1.Z231WD Arachis hypogaea HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 67.4
MELO3C014081.2 Cucumis melo HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 68.2
Lj1P897T22 Lonicera japonica HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 68.2
PGR042G2666 Punica granatum HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 68.2
PGR083G2770 Punica granatum HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 68.2
Sopen06g034020 Solanum pennellii HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 68.2
VMungo0251G3320 Vigna mungo HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 67.4
VMungo0540G0608 Vigna mungo HOM05D003402 ORTHO05D003939 3.9e-40 168.3 129 67.4
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 5.0e-40 167.9 129 68.2
Dinv41799 Davidia involucrata HOM05D003402 ORTHO05D003939 5.0e-40 167.9 129 68.2
Gohir.D13G133300 Gossypium hirsutum HOM05D003402 ORTHO05D003939 5.0e-40 167.9 129 68.2
Oeu017108.1 Olea europaea HOM05D003402 ORTHO05D003939 5.0e-40 167.9 129 68.2
CANSAT01G1535 Cannabis sativa HOM05D003402 ORTHO05D003939 6.6e-40 167.5 129 67.4
CiPaw.14G096300 Carya illinoinensis HOM05D003402 ORTHO05D003939 6.6e-40 167.5 129 67.4
Lj6g0015324 Lotus japonicus HOM05D003402 ORTHO05D003939 6.6e-40 167.5 129 66.7
Prupe.6G031600 Prunus persica HOM05D003402 ORTHO05D003939 6.6e-40 167.5 129 66.7
TAR627G1074 Trochodendron aralioides HOM05D003402 ORTHO05D003939 6.6e-40 167.5 129 66.7
Cc07_g13980 Coffea canephora HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 68.2
MELO3C005848.2 Cucumis melo HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 68.2
Glyma.18G072600 Glycine max HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 66.7
Glyma.18G072700 Glycine max HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 66.7
Gohir.A04G003200 Gossypium hirsutum HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 68.2
MD11G1039900 Malus domestica HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 66.7
PGSC0003DMG400030475 Solanum tuberosum HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 67.4
vmacro11627 Vaccinium macrocarpon HOM05D003402 ORTHO05D003939 8.6e-40 167.2 129 67.4
CAN.G874.67 Capsicum annuum HOM05D003402 ORTHO05D003939 1.1e-39 166.8 129 69.0
Gorai.013G149600 Gossypium raimondii HOM05D003402 ORTHO05D003939 1.1e-39 166.8 129 67.4
MBI10_g27408_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 1.1e-39 166.8 129 67.4
Psat5g164680 Pisum sativum HOM05D003402 ORTHO05D003939 1.1e-39 166.8 125 69.6
TAR629G1228 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.1e-39 166.8 129 65.9
MSTRG.3724 Avicennia marina HOM05D003402 ORTHO05D003939 1.5e-39 166.4 129 66.7
Ca_14849_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 1.5e-39 166.4 125 69.6
Ca_27956_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 1.5e-39 166.4 125 69.6
Nn2g11712 Nelumbo nucifera HOM05D003402 ORTHO05D003939 1.5e-39 166.4 129 68.2
TPR.G17934 Trifolium pratense HOM05D003402 ORTHO05D003939 1.5e-39 166.4 125 68.8
Aqoxy4G03102 Aquilegia oxysepala HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 66.7
Ca_07475_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 1.9e-39 166.0 125 68.8
Duzib268G1061 Durio zibethinus HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 67.4
Os01g0788950 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 65.9
Os03g0115200 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 65.9
Phvul.002G190300 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 65.9
Prupe.6G032300 Prunus persica HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 65.9
Zm00001eb151110 Zea mays HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 65.9
Zm00001eb369690 Zea mays HOM05D003402 ORTHO05D003939 1.9e-39 166.0 129 65.9
EL10Ac4g10262 Beta vulgaris HOM05D003402 ORTHO05D003939 3.3e-39 165.2 129 65.9
ATR0743G241 Amborella trichopoda HOM05D003402 ORTHO05D003939 4.3e-39 164.9 129 65.1
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 4.3e-39 164.9 129 68.2
Medtr3g061130 Medicago truncatula HOM05D003402 ORTHO05D003939 4.3e-39 164.9 125 68.8
Rhsim09G0029600 Rhododendron simsii HOM05D003402 ORTHO05D003939 5.6e-39 164.5 129 66.7
THA.LOC104801911 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 5.6e-39 164.5 129 65.1
arahy.Tifrunner.gnm1.ann1.V7LA8U Arachis hypogaea HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 65.9
CSS0009706 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 67.4
FAN08G1169 Fragaria x ananassa HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 65.9
FAN17G0134 Fragaria x ananassa HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 65.9
Hma1.2p1_0193F.1_g084090 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 66.7
Hma1.2p1_2995F.1_g331420 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 66.7
RcHm_v2.0_Chr7g0227141 Rosa chinensis HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 65.9
THA.LOC104822711 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 7.3e-39 164.1 129 66.7
FvH4_5g31610 Fragaria vesca HOM05D003402 ORTHO05D003939 9.5e-39 163.7 129 65.1
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 9.5e-39 163.7 129 65.1
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 9.5e-39 163.7 129 64.3
Phvul.006G060100 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 9.5e-39 163.7 129 65.1
MSTRG.15682 Avicennia marina HOM05D003402 ORTHO05D003939 1.2e-38 163.3 125 67.2
EL10Ac4g10278 Beta vulgaris HOM05D003402 ORTHO05D003939 1.2e-38 163.3 129 65.1
FAN03G3056 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.2e-38 163.3 129 65.1
unitig_748.g8474 Utricularia gibba HOM05D003402 ORTHO05D003939 1.2e-38 163.3 129 64.3
DCAR_013538 Daucus carota HOM05D003402 ORTHO05D003939 2.1e-38 162.5 129 66.7
DCAR_023786 Daucus carota HOM05D003402 ORTHO05D003939 2.1e-38 162.5 129 66.7
Nitab4.5_0012601g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 2.1e-38 162.5 129 66.7
PSO675G7280 Papaver somniferum HOM05D003402 ORTHO05D003939 2.1e-38 162.5 129 62.0
AUR62026671 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.8e-38 162.2 129 64.3
AUR62035669 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.8e-38 162.2 129 64.3
AUR62040577 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.8e-38 162.2 129 64.3
Nitab4.5_0006644g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 2.8e-38 162.2 129 66.7
unitig_0.g2650 Utricularia gibba HOM05D003402 ORTHO05D003939 2.8e-38 162.2 129 63.6
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 3.6e-38 161.8 129 64.3
Nn1g09837 Nelumbo nucifera HOM05D003402 ORTHO05D003939 3.6e-38 161.8 129 65.9
Lsat_1_v5_gn_5_681 Lactuca sativa HOM05D003402 ORTHO05D003939 6.2e-38 161.0 129 64.3
Sp1g41330 Schrenkiella parvula HOM05D003402 ORTHO05D003939 6.2e-38 161.0 129 63.6
Sc03g0011690 Simmondsia chinensis HOM05D003402 ORTHO05D003939 6.2e-38 161.0 129 65.9
Carub.0003s1264 Capsella rubella HOM05D003402 ORTHO05D003939 8.0e-38 160.6 129 63.6
AT3G13230 Arabidopsis thaliana HOM05D003402 ORTHO05D003939 1.1e-37 160.2 129 63.6
AL3G25080 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 1.4e-37 159.8 129 63.6
SHI18619 Sapria himalayana HOM05D003402 ORTHO05D003939 1.4e-37 159.8 129 64.3
SEGI_07786 Sequoiadendron giganteum HOM05D003402 ORTHO05D003939 2.3e-37 159.1 129 62.8
BcaB06g25476 Brassica carinata HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 63.6
BcaC05g29198 Brassica carinata HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 62.8
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 62.8
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 62.8
BolC5t34140H Brassica oleracea HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 62.8
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 62.8
Thhalv10021508m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 3.1e-37 158.7 129 62.8
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 4.0e-37 158.3 129 64.3
Migut.K00809 Erythranthe guttata HOM05D003402 ORTHO05D003939 4.0e-37 158.3 129 62.0
Aa31LG8G510 Aethionema arabicum HOM05D003402 ORTHO05D003939 5.2e-37 157.9 129 62.0
HanXRQChr08g0232741 Helianthus annuus HOM05D003402 ORTHO05D003939 5.2e-37 157.9 129 62.0
HPP92_006270 Vanilla planifolia HOM05D003402 ORTHO05D003939 5.2e-37 157.9 129 61.2
Thhalv10014450m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 6.8e-37 157.5 129 62.0
Migut.K00808 Erythranthe guttata HOM05D003402 ORTHO05D003939 1.2e-36 156.8 129 61.2
Pp3c2_270 Physcomitrium patens HOM05D003402 ORTHO05D003939 1.2e-36 156.8 129 60.5
Mapoly0008s0090 Marchantia polymorpha HOM05D003402 ORTHO05D003939 1.5e-36 156.4 129 60.5
Sp3g11460 Schrenkiella parvula HOM05D003402 ORTHO05D003939 1.5e-36 156.4 129 61.2
SMO353G0217 Selaginella moellendorffii HOM05D003402 ORTHO05D003939 1.5e-36 156.4 129 61.2
CARHR087880 Cardamine hirsuta HOM05D003402 ORTHO05D003939 2.0e-36 156.0 129 60.5
BcaB02g10802 Brassica carinata HOM05D003402 ORTHO05D003939 2.6e-36 155.6 129 63.6
MBI10_g27411_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 3.4e-36 155.2 120 66.7
CANSAT01G1735 Cannabis sativa HOM05D003402 ORTHO05D003939 7.5e-36 154.1 129 63.6
EL10Ac1g01597 Beta vulgaris HOM05D003402 ORTHO05D003939 9.8e-36 153.7 129 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2223 Anthoceros agrestis HOM05D003402 ORTHO05D003939 2.2e-35 152.5 129 59.7
AagrBONN_evm.TU.Sc2ySwM_344.5330 Anthoceros agrestis HOM05D003402 ORTHO05D003939 2.2e-35 152.5 129 59.7
BcaB02g10801 Brassica carinata HOM05D003402 ORTHO05D003939 1.4e-34 149.8 123 65.0
CBR_g49013 Chara braunii HOM05D003402 ORTHO05D003939 5.4e-34 147.9 129 57.4
CSS0032042 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 6.0e-33 144.4 129 62.0
CANSAT78G0394 Cannabis sativa HOM05D003402 ORTHO05D003939 7.8e-33 144.1 129 55.8
A05p17340 Brassica napus HOM05D003402 ORTHO05D003939 1.0e-32 143.7 125 62.4
Sed0019842 Sechium edule HOM05D003402 ORTHO05D003939 1.1e-31 140.2 131 62.6
PRCOL_00004610 Prasinoderma coloniale HOM05D003402 ORTHO05D003939 4.7e-30 134.8 129 54.3
SGA_v2.0_scaffold17G08096 Striga asiatica HOM05D003402 ORTHO05D003939 6.2e-30 134.4 129 53.5
SGA_v2.0_scaffold312G48272 Striga asiatica HOM05D003402 ORTHO05D003939 6.2e-30 134.4 129 53.5
Cre12.g549700 Chlamydomonas reinhardtii HOM05D003402 ORTHO05D003939 1.1e-29 133.7 129 52.7
MCO11G345 Micromonas commoda HOM05D003402 ORTHO05D003939 3.1e-29 132.1 129 53.5
BraA05t20630Z Brassica rapa HOM05D003402 ORTHO05D003939 1.7e-27 126.3 103 62.1
Hund02357 Selenicereus undatus HOM05D003402 ORTHO05D003939 6.4e-27 124.4 134 51.5
Haze_26506 Corylus avellana HOM05D003402 ORTHO05D003939 2.4e-26 122.5 129 47.3
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 2.7e-25 119.0 126 56.3
Cfa026698 Carpinus fangiana HOM05D003402 ORTHO05D003939 3.5e-25 118.6 129 46.5
AUR62017905 Chenopodium quinoa HOM05D003402 ORTHO05D003939 4.6e-25 118.2 130 50.0
AL1G63860 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 6.0e-25 117.9 96 62.5
Hund02372 Selenicereus undatus HOM05D003402 ORTHO05D003939 3.9e-24 115.2 134 49.3
Ah.16g107980 Amaranthus hybridus HOM05D003402 ORTHO05D003939 5.1e-24 114.8 127 50.4
BcaC08g44215 Brassica carinata HOM05D003402 ORTHO05D003939 1.6e-22 109.8 124 53.2
ATR0686G129 Amborella trichopoda HOM05D003402 ORTHO05D003939 2.1e-22 109.4 91 60.4
AUR62017904 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.6e-22 108.6 130 48.5
Aa31LG10G440 Aethionema arabicum HOM05D003402 ORTHO05D003939 1.1e-21 107.1 91 58.2
Medtr5g088410 Medicago truncatula HOM05D003402 ORTHO05D003939 8.9e-21 104.0 96 58.3
Actinidia10580 Actinidia chinensis HOM05D003402 ORTHO05D003939 1.5e-20 103.2 85 61.2
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.9e-19 99.0 81 67.9
EL10Ac4g07749 Beta vulgaris HOM05D003402 ORTHO05D003939 4.9e-19 98.2 123 46.3
Sc07g0001990 Simmondsia chinensis HOM05D003402 ORTHO05D003939 8.4e-19 97.4 91 54.9
AUR62033193 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.0e-17 91.3 73 67.1
C06p16210 Brassica napus HOM05D003402 ORTHO05D003939 7.3e-15 84.3 124 44.4
BolC6t36818H Brassica oleracea HOM05D003402 ORTHO05D003939 7.3e-15 84.3 124 44.4
Cpa.g.sc106.81 Carica papaya HOM05D003402 ORTHO05D003939 7.3e-15 84.3 103 52.4
AUR62003592 Chenopodium quinoa HOM05D003402 ORTHO05D003939 8.1e-14 80.9 84 50.0
Peaxi162Scf01158g00027 Petunia axillaris HOM05D003402 ORTHO05D003939 2.0e-12 76.3 65 63.1
AUR62043564 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.7e-11 73.2 92 43.5
Sopen12g018710 Solanum pennellii HOM05D003402 ORTHO05D003939 1.4e-10 70.1 57 59.6
GSVIVG01008219001 Vitis vinifera HOM05D003402 ORTHO05D003939 7.8e-09 64.3 51 58.8


User provided reference genes

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