Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 0.0e+00 1411.4 709 100.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1126.3 710 81.1
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.0e-295 1018.8 710 75.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.9e-266 922.5 660 74.2
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.1e-244 849.4 705 62.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 1.3e-243 846.7 709 63.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 3.0e-243 845.5 635 68.7
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 1.1e-242 843.6 666 66.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.4e-240 836.6 666 65.3
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 2.3e-240 835.9 710 62.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 8.9e-240 833.9 721 62.6
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 4.4e-239 831.6 703 61.2
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 4.4e-239 831.6 702 61.8
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 7.5e-239 830.9 702 62.1
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.9e-239 830.5 666 65.0
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 4.9e-238 828.2 705 61.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.2e-237 825.5 703 61.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 5.4e-237 824.7 692 63.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 9.2e-237 823.9 675 63.7
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 4.6e-236 821.6 696 62.5
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 3.0e-235 818.9 626 67.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 3.9e-235 818.5 701 60.9
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 1.1e-234 817.0 670 62.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.6e-234 814.7 666 64.9
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 7.3e-234 814.3 706 60.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 7.3e-234 814.3 687 62.9
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 9.5e-234 813.9 705 60.0
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 1.6e-233 813.1 707 60.3
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 2.8e-233 812.4 635 65.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 8.1e-233 810.8 656 64.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 8.1e-233 810.8 731 59.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 6.8e-232 807.7 695 62.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 6.8e-232 807.7 703 59.7
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 2.6e-231 805.8 708 59.9
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 9.9e-231 803.9 632 65.2
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 3.8e-230 802.0 698 61.6
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.4e-229 800.0 702 59.5
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.9e-229 799.7 698 61.5
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 1.9e-229 799.7 704 58.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 2.4e-229 799.3 708 59.2
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.1e-229 797.7 707 61.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.6e-228 796.6 724 59.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 2.1e-228 796.2 699 59.1
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 3.5e-228 795.4 701 60.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.6e-228 795.0 703 60.0
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.3e-227 793.5 689 62.0
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 1.1e-226 790.4 704 58.7
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.1e-226 790.4 690 60.0
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 1.5e-226 790.0 699 58.9
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.6e-226 788.1 694 60.4
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 9.6e-226 787.3 714 58.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.1e-225 786.2 684 60.5
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.4e-224 783.5 665 61.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 2.4e-224 782.7 673 60.8
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.3e-222 776.9 659 60.8
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 2.2e-222 776.2 631 62.4
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 3.8e-222 775.4 647 63.7
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 1.4e-221 773.5 632 63.1
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 3.2e-221 772.3 658 60.5
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 5.4e-221 771.5 707 56.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 7.1e-221 771.2 631 62.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 4.6e-220 768.5 721 56.7
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 5.1e-219 765.0 666 61.3
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 1.5e-218 763.5 681 59.6
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 2.5e-218 762.7 725 55.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 2.5e-218 762.7 650 59.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 2.1e-217 759.6 664 60.4
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 6.2e-217 758.1 706 58.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 8.1e-217 757.7 705 58.3
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 2.4e-216 756.1 632 60.9
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 1.4e-213 746.9 699 57.1
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 4.2e-213 745.3 664 59.0
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 9.3e-213 744.2 665 59.5
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.6e-212 743.4 704 57.0
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 7.9e-212 741.1 648 60.0
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 3.0e-211 739.2 702 58.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 2.5e-210 736.1 708 56.5
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 2.8e-209 732.6 678 57.7
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 8.1e-209 731.1 709 55.9
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-208 730.7 709 55.9
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 2.4e-208 729.6 695 57.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 4.0e-208 728.8 695 57.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-207 726.5 695 57.1
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 7.6e-207 724.5 711 56.4
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 1.3e-206 723.8 711 55.7
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 1.3e-206 723.8 669 58.4
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.7e-206 723.4 700 56.6
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 3.8e-206 722.2 671 57.5
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 1.1e-205 720.7 681 56.8
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.1e-205 720.7 703 55.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.0e-203 714.1 665 56.2
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-203 713.8 704 55.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 6.7e-203 711.4 653 57.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 1.1e-202 710.7 704 55.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 2.1e-201 706.4 706 55.1
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 8.7e-195 684.5 629 57.9
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.5e-191 673.7 804 48.3
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.2e-182 643.3 559 63.3
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.5e-181 638.6 527 61.7
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 3.9e-179 632.5 635 55.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.9e-174 616.3 524 62.2
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 1.3e-158 564.3 585 54.5
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.7e-150 537.3 525 54.9
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 5.2e-147 525.8 509 56.2
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.4e-138 496.1 684 42.7
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.6e-135 487.6 678 41.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.0e-134 485.0 693 39.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.7e-134 484.2 733 40.1
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 3.0e-134 483.4 498 54.8
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.6e-134 481.9 667 42.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-131 474.2 532 50.0
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 8.3e-129 465.3 395 58.7
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.0e-126 458.4 547 48.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 8.1e-124 448.7 411 57.4
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.0e-122 444.1 626 41.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.7e-111 407.1 449 49.9
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.9e-101 374.4 228 79.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.0e-98 364.4 368 52.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 9.9e-98 362.1 316 60.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 4.3e-85 320.1 351 50.1
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.6e-84 318.2 190 79.5
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.4e-75 287.7 463 39.5
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.2e-71 275.4 384 44.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.0e-70 272.3 360 45.8
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-67 261.9 513 33.3
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.0e-65 255.8 349 46.7
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-62 245.0 195 62.1
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 2.3e-62 244.6 141 84.4
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 2.2e-60 238.0 242 56.2
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-60 238.0 141 82.3
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.1e-59 234.2 142 80.3
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 6.5e-57 226.5 256 52.3
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.1e-48 199.1 648 26.9
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 7.2e-48 196.4 118 78.8
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 4.7e-47 193.7 116 79.3
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.0e-46 192.6 116 81.0
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.0e-45 188.3 793 24.2
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 4.7e-39 167.2 119 68.9
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.7e-33 148.7 83 86.7
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 5.0e-33 147.1 82 82.9
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.9e-32 145.2 83 83.1
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 9.5e-32 142.9 407 30.5
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-30 139.0 192 44.8
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.0e-30 137.5 325 32.3
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 3.4e-29 134.4 136 52.9
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 3.7e-28 131.0 168 45.8
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 7.0e-27 126.7 110 59.1
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.5e-26 124.4 153 47.1
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-25 122.1 134 51.5
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.3e-24 117.9 164 45.7
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 4.9e-20 104.0 237 29.1
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-19 102.8 104 51.0


User provided reference genes

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