Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 6154.7 3033 100.0
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 4997.2 2998 81.5
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 4993.3 2996 80.9
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 4980.6 2996 80.7
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 4654.4 2997 75.9
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 4095.0 3016 66.4
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 4066.2 3025 65.6
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 4063.1 3036 65.5
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 4052.7 3020 65.8
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 4045.7 3018 66.0
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 4034.2 3017 65.4
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 4030.7 3140 63.7
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 4029.2 3039 65.2
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 4024.9 3024 64.8
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 4023.8 3039 65.1
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 4020.7 3014 64.8
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 4020.7 3019 65.2
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 4018.4 3018 64.9
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 4003.0 3031 64.8
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 4000.7 3015 65.5
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 3954.4 3097 63.5
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 3938.7 3020 63.8
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 3921.7 3022 63.2
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 3910.9 3023 63.0
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 3902.8 3023 63.4
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 3899.0 3015 63.5
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3896.3 3035 63.1
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 3892.4 3008 63.9
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 3891.3 3018 62.9
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 3863.2 3012 62.5
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 3855.8 3014 62.6
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 3845.4 3012 63.0
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 3839.7 3025 62.5
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 3824.6 3086 61.3
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 3824.2 3016 62.7
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 3816.5 3627 55.3
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 3816.2 3014 62.4
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 3813.1 2944 64.3
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 3811.2 3040 62.1
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 3809.6 3016 62.3
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 3791.5 3009 61.8
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 3789.2 3008 61.8
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 3788.0 3019 61.6
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 3787.7 3019 61.6
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 3776.5 3013 62.0
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 3757.2 3029 61.4
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 3748.7 3000 61.6
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 3747.6 2999 61.6
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 3738.3 3006 61.2
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 3735.7 3004 61.0
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 3732.2 3005 61.5
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 3727.9 3003 60.9
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 3726.0 3004 60.8
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 3724.9 3003 60.9
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3719.9 2615 68.9
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 3716.8 3008 60.7
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 3706.8 3004 60.9
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 3702.5 3009 60.8
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 3700.6 3008 60.0
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 3700.2 3004 60.5
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 3698.3 3009 60.3
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 3672.1 3009 59.9
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 3643.2 3016 59.5
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 3616.6 2857 62.5
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3611.6 3024 59.9
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 3575.8 2728 63.9
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 3560.0 3024 58.3
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 3550.0 3099 57.9
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 3506.8 2839 60.7
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 3491.4 2679 64.0
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 3443.7 2667 63.4
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 3347.8 3013 55.3
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 3311.9 2350 68.5
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 3157.1 2993 55.8
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 3105.1 2351 64.2
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 3040.4 3024 52.2
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2973.7 2936 52.4
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2953.3 2502 58.4
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2842.4 3092 48.4
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2774.6 2360 58.1
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2751.9 3072 46.4
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2749.9 2356 58.1
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2736.8 3043 46.5
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 2563.5 2801 48.7
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2515.0 3014 43.9
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 2504.6 3014 45.4
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2493.8 2273 54.0
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 2423.3 1903 63.6
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 2343.9 1724 66.6
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 2263.0 1766 63.4
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1536.5 1113 67.0
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1509.2 3391 31.8
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1206.4 1095 57.7
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.7e-300 1037.7 4185 24.9
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 3.9e-276 956.8 1347 41.7
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.5e-267 927.5 707 65.9
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 1.8e-260 904.8 645 68.8
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 1.0e-231 809.3 736 55.6
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 1.0e-228 799.3 667 59.8
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.6e-221 774.2 1310 37.9
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 5.2e-220 770.4 850 49.6
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.1e-188 664.8 1776 30.1
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.2e-181 642.9 623 49.9
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 6.0e-160 570.9 588 49.5
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 3.1e-148 531.9 350 74.9
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 5.8e-147 527.7 507 54.0
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 8.2e-141 507.3 331 75.2
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.1e-137 496.9 313 77.3
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 3.2e-137 495.4 331 74.0
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.1e-135 488.0 592 45.9
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.4e-127 463.4 840 35.6
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.1e-118 433.7 262 80.9
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 9.4e-113 414.1 369 55.0
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.0e-98 367.5 451 46.6
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 1.8e-95 356.7 244 71.3
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 6.3e-93 348.2 239 71.1
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 9.5e-81 307.8 207 65.7
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.3e-74 286.6 223 59.2
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 1.6e-72 280.4 291 49.1
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 3.1e-71 276.2 525 37.3
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 6.6e-58 231.9 203 60.1
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 6.9e-55 221.9 164 63.4
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 6.0e-51 208.8 121 82.6
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 1.9e-49 203.8 112 86.6
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 1.1e-47 198.0 108 88.0
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 2.4e-47 196.8 107 86.9
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 9.0e-47 194.9 108 87.0
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 4.9e-45 189.1 106 83.0
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 8.4e-45 188.3 150 57.3
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.9e-44 187.2 108 81.5
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.2e-43 184.5 132 64.4
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 2.1e-43 183.7 232 44.0
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 8.1e-40 171.8 157 52.9
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 2.4e-39 170.2 164 51.8
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.7e-37 164.1 96 79.2
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 1.1e-36 161.4 132 56.8
Psat0s760g0040 Pisum sativum HOM05D003919 ORTHO05D004906 3.4e-30 139.8 217 37.3
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 1.2e-22 114.8 150 42.0
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 7.2e-20 105.5 114 47.4
Lsat_1_v5_gn_5_23900 Lactuca sativa HOM05D003509 ORTHO05D004205 2.1e-19 104.0 358 26.0
Oeu014156.1 Olea europaea HOM05D003919 ORTHO05D036952 7.9e-19 102.1 161 36.6
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.3e-13 84.7 129 43.4
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 1.7e-13 84.3 87 50.6
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 6.5e-13 82.4 59 64.4
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.1e-12 81.6 569 22.7
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 5.5e-12 79.3 44 88.6
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 1.6e-11 77.8 44 86.4
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 7.9e-11 75.5 89 43.8
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 3.3e-09 70.1 70 50.0
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 4.4e-09 69.7 72 47.2
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 5.7e-09 69.3 57 57.9
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 9.7e-09 68.6 71 45.1
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 1.4e-07 64.7 61 52.5
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 1.8e-07 64.3 70 42.9


User provided reference genes

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