Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.3e-169 599.7 335 100.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.5e-116 421.4 258 82.9
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 8.0e-114 414.5 257 82.1
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.2e-108 396.4 254 79.1
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.5e-107 392.9 251 78.1
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.4e-105 387.1 250 76.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.8e-105 386.7 255 74.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 6.8e-105 384.8 249 75.9
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.2e-104 384.0 246 75.6
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.2e-104 384.0 256 74.2
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 3.4e-104 382.5 258 72.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.4e-104 382.1 257 74.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 4.4e-104 382.1 258 74.0
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.4e-104 382.1 257 73.2
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 9.8e-104 380.9 261 72.4
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.2e-103 379.8 258 72.9
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.2e-103 379.8 259 72.2
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.7e-103 379.0 252 74.6
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.7e-103 379.0 261 72.0
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 6.3e-103 378.3 254 74.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 6.3e-103 378.3 246 75.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-102 377.5 254 73.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.4e-102 377.1 248 75.0
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.4e-102 377.1 253 73.9
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.8e-102 376.7 246 75.6
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.4e-102 376.3 252 73.4
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.4e-102 376.3 267 69.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.1e-102 375.9 246 74.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.1e-102 375.9 295 63.7
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 3.1e-102 375.9 246 72.8
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 5.4e-102 375.2 254 73.2
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 5.4e-102 375.2 254 72.8
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.4e-102 375.2 254 72.8
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.0e-102 374.8 246 72.4
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 9.1e-102 374.4 255 73.3
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.2e-101 374.0 259 71.8
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.2e-101 374.0 263 70.3
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.6e-101 373.6 259 71.4
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.6e-101 373.6 256 73.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.0e-101 373.2 257 71.2
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.0e-101 373.2 251 72.9
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.5e-101 372.5 252 72.6
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 3.5e-101 372.5 248 71.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 5.9e-101 371.7 254 72.8
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.0e-100 370.9 258 70.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.0e-100 370.9 257 72.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.0e-100 370.9 248 73.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.0e-100 370.9 252 72.6
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-100 370.5 251 74.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.3e-100 370.5 245 74.7
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.7e-100 370.2 250 73.2
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.3e-100 369.8 250 73.6
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.0e-100 368.6 250 73.2
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.0e-100 368.6 259 70.7
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 8.6e-100 367.9 261 71.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 8.6e-100 367.9 256 72.3
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.1e-99 367.5 253 72.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.5e-99 367.1 283 67.5
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 2.5e-99 366.3 293 63.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.2e-99 365.5 248 72.2
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.2e-99 365.5 244 70.9
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 9.5e-99 364.4 254 71.3
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.6e-98 363.6 256 71.1
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.6e-98 363.6 249 72.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 6.1e-98 361.7 246 70.7
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.8e-97 360.1 255 69.8
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.3e-97 359.8 256 71.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.3e-97 359.8 260 68.1
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.3e-97 359.8 247 72.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 6.8e-97 358.2 246 70.7
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 6.8e-97 358.2 256 66.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 8.8e-97 357.8 245 69.8
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.5e-96 357.1 249 68.7
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.7e-95 353.6 259 68.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.2e-95 353.2 259 68.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 2.8e-95 352.8 253 68.0
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 8.3e-95 351.3 253 69.2
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 5.4e-94 348.6 254 67.7
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 9.2e-94 347.8 301 61.8
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.2e-93 347.4 314 58.6
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.6e-93 347.1 242 70.2
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.0e-93 346.7 302 61.3
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 3.5e-93 345.9 263 66.9
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 5.9e-93 345.1 253 66.4
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 7.8e-93 344.7 267 65.2
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-92 344.0 259 66.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-92 344.0 253 67.2
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.3e-92 344.0 253 67.2
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.9e-92 342.8 254 66.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 8.6e-92 341.3 253 66.4
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.5e-91 340.5 339 57.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 4.7e-90 335.5 324 56.2
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.8e-82 309.7 243 61.3
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.6e-82 309.3 249 60.6
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.7e-82 308.9 249 60.6
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.2e-82 308.5 249 60.6
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.8e-81 307.0 249 60.2
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 4.0e-81 305.8 220 70.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 6.6e-76 288.5 250 58.0
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 4.3e-75 285.8 202 68.8
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 3.1e-73 279.6 246 60.2
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 6.0e-69 265.4 261 51.3
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.7e-68 263.8 260 50.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-67 261.2 249 51.4
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 6.2e-66 255.4 260 53.1
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 9.6e-59 231.5 243 46.5
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-55 220.7 167 64.1
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 4.2e-54 216.1 133 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 9.3e-54 214.9 213 50.7
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-50 204.5 200 56.0
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.1e-46 191.4 175 60.6
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.6e-45 187.6 192 52.6
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.3e-44 183.7 113 77.9
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 3.0e-44 183.3 210 50.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.2e-40 171.4 162 58.6
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.1e-38 162.2 184 53.3
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.6e-35 152.5 114 64.9
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 2.1e-34 150.6 174 50.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 8.2e-34 148.7 110 64.5
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.8e-33 147.5 118 61.0
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.1e-29 134.0 94 70.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.7e-29 133.7 97 69.1
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.3e-28 130.6 110 57.3
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-27 128.3 75 82.7
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.9e-27 127.5 247 32.4
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.3e-27 126.7 111 54.1
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.4e-24 116.7 82 63.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.6e-21 106.7 82 63.4
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-20 105.1 72 65.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.8e-20 104.4 80 62.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 2.5e-19 100.5 80 62.5
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 6.3e-18 95.9 78 53.8
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 5.3e-17 92.8 50 86.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 9.1e-17 92.0 56 78.6
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 5.9e-16 89.4 258 28.7
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-15 88.2 56 76.8
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-14 85.1 115 46.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.9e-14 84.3 183 28.4
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.2e-14 83.6 94 55.3
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.2e-14 82.4 143 36.4
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.7e-13 80.5 172 32.0
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 5.3e-09 66.2 120 34.2
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 5.3e-09 66.2 49 71.4
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 3.4e-08 63.5 42 64.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 2.9e-07 60.5 60 51.7


User provided reference genes

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