Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 7.0e-136 487.3 242 100.0
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 8.0e-116 420.6 235 86.8
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 5.8e-114 414.5 242 83.1
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 7.5e-114 414.1 235 85.1
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 8.9e-99 364.0 243 72.4
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 1.1e-96 357.1 243 72.4
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 3.3e-93 345.5 245 67.3
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 9.6e-93 344.0 245 68.2
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 1.2e-92 343.6 241 67.6
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 4.0e-91 338.6 245 67.3
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 8.9e-91 337.4 245 66.9
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 8.9e-91 337.4 241 67.6
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.5e-90 336.7 245 67.8
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 2.0e-90 336.3 242 66.1
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 2.6e-90 335.9 245 66.9
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 2.6e-90 335.9 244 66.8
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 5.8e-90 334.7 239 67.8
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 1.3e-89 333.6 245 66.9
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 1.3e-89 333.6 245 66.1
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 1.7e-89 333.2 243 66.3
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 1.7e-89 333.2 232 66.4
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 2.2e-89 332.8 246 65.9
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 2.2e-89 332.8 239 66.9
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 2.2e-89 332.8 246 65.0
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 2.2e-89 332.8 245 64.5
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 2.9e-89 332.4 245 64.9
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 2.9e-89 332.4 236 68.2
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 3.8e-89 332.0 238 67.2
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 3.8e-89 332.0 246 65.9
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 4.9e-89 331.6 245 65.3
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 4.9e-89 331.6 246 65.4
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 8.4e-89 330.9 240 66.7
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 1.1e-88 330.5 242 66.9
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 1.1e-88 330.5 242 65.3
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 1.4e-88 330.1 244 65.2
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.4e-88 330.1 245 64.9
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 1.4e-88 330.1 245 64.5
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 1.4e-88 330.1 245 66.5
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 1.4e-88 330.1 245 66.5
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 1.9e-88 329.7 240 65.0
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 1.9e-88 329.7 245 65.7
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 2.4e-88 329.3 244 65.6
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 2.4e-88 329.3 242 64.9
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 3.2e-88 328.9 245 64.5
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 4.2e-88 328.6 242 66.5
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 7.1e-88 327.8 234 65.4
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 7.1e-88 327.8 247 62.8
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 1.2e-87 327.0 235 66.0
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 2.1e-87 326.2 245 63.3
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 2.7e-87 325.9 245 64.5
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 3.5e-87 325.5 245 63.7
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 3.5e-87 325.5 245 63.3
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 6.0e-87 324.7 242 66.1
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 1.0e-86 323.9 234 65.8
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 1.3e-86 323.6 245 64.1
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 1.7e-86 323.2 245 64.1
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.7e-86 323.2 242 64.0
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 2.3e-86 322.8 241 64.3
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 3.0e-86 322.4 245 62.9
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 3.9e-86 322.0 246 65.4
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 3.9e-86 322.0 241 64.3
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 5.1e-86 321.6 245 63.7
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 6.6e-86 321.2 245 63.7
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 1.9e-85 319.7 244 63.1
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 2.5e-85 319.3 245 62.4
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 3.3e-85 318.9 237 64.1
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 4.3e-85 318.5 247 64.0
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 5.6e-85 318.2 241 64.3
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 9.6e-85 317.4 241 63.9
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 1.6e-84 316.6 245 63.3
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 1.6e-84 316.6 261 60.9
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 2.1e-84 316.2 241 63.9
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 2.1e-84 316.2 241 63.9
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 2.8e-84 315.8 241 63.9
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 3.6e-84 315.5 265 59.6
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 3.6e-84 315.5 236 62.7
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 4.8e-84 315.1 242 62.4
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 8.1e-84 314.3 242 62.4
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 1.1e-83 313.9 245 61.2
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 1.1e-83 313.9 243 63.4
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 1.1e-83 313.9 245 64.5
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 1.8e-83 313.2 243 63.4
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 2.4e-83 312.8 261 60.2
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 3.1e-83 312.4 246 64.2
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 6.9e-83 311.2 245 61.6
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 3.4e-82 308.9 245 60.4
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 7.6e-82 307.8 244 60.7
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 7.6e-82 307.8 245 60.8
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 1.3e-81 307.0 245 60.4
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 1.7e-81 306.6 245 60.4
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 2.2e-81 306.2 246 61.8
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 2.2e-81 306.2 245 60.4
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 8.4e-81 304.3 245 60.0
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 2.4e-80 302.8 245 59.6
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 1.6e-79 300.1 195 73.3
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 1.6e-79 300.1 245 58.0
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 1.1e-77 293.9 243 57.2
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 4.3e-77 292.0 246 58.1
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 7.1e-72 274.6 252 55.2
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 2.7e-71 272.7 239 52.7
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 3.7e-68 262.3 160 77.5
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 6.2e-68 261.5 310 44.5
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 5.8e-66 255.0 216 59.7
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 8.4e-65 251.1 232 54.3
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 1.6e-63 246.9 245 52.7
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 3.0e-62 242.7 160 69.4
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 2.8e-60 236.1 239 49.0
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 3.1e-59 232.6 244 52.0
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 3.1e-59 232.6 177 59.9
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 1.7e-57 226.9 236 48.3
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 2.9e-57 226.1 241 48.5
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 3.8e-57 225.7 184 59.8
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 1.3e-52 210.7 148 67.6
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 1.4e-51 207.2 118 82.2
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 2.0e-50 203.4 233 43.8
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 7.7e-50 201.4 213 49.3
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 7.7e-50 201.4 213 49.3
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 1.2e-47 194.1 117 78.6
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 2.0e-37 160.2 234 41.0
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 7.7e-34 148.3 123 58.5
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 1.9e-32 143.7 117 59.0
Haze_10680 Corylus avellana HOM05D006166 ORTHO05D007663 5.7e-29 132.1 121 55.4
Haze_10658 Corylus avellana HOM05D006166 ORTHO05D007663 7.0e-27 125.2 115 54.8
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 7.7e-18 95.1 56 76.8
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 6.5e-17 92.0 171 36.3
Haze_10677 Corylus avellana HOM05D006166 ORTHO05D007663 5.7e-13 79.0 44 81.8


User provided reference genes

Program Settings