Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.9e-179 630.9 306 100.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.9e-77 293.5 415 46.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.4e-77 292.0 417 47.5
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.4e-77 292.0 417 47.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.1e-73 278.1 415 44.6
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-71 274.2 192 75.0
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.2e-71 274.2 413 44.8
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.2e-68 264.2 415 42.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.8e-67 260.4 483 40.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.5e-66 257.3 415 41.2
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.8e-65 253.1 416 41.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.7e-62 243.8 416 41.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.4e-61 240.7 410 41.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.4e-61 240.7 418 42.6
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 9.3e-61 238.0 415 41.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-60 237.7 414 42.3
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.6e-60 237.3 412 41.3
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.6e-60 237.3 411 40.9
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.6e-60 235.7 413 40.9
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 6.1e-60 235.3 412 40.0
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.8e-59 233.8 417 43.2
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.0e-59 233.0 415 41.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.1e-59 232.3 413 40.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.7e-59 231.5 406 39.4
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.7e-59 231.5 194 62.4
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-58 231.1 486 37.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.5e-58 230.7 415 40.5
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.3e-58 229.6 415 39.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.3e-58 229.2 413 40.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 7.4e-58 228.4 410 39.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 7.4e-58 228.4 414 40.3
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 7.4e-58 228.4 410 40.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.3e-57 227.6 422 40.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.6e-57 227.3 414 40.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.8e-57 226.5 413 39.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.7e-57 226.1 411 39.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.8e-57 225.7 414 39.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.3e-57 225.3 415 38.6
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.1e-56 224.6 418 40.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-56 224.2 413 39.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.4e-56 224.2 420 40.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.8e-56 223.8 414 39.6
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.3e-56 222.2 423 37.8
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.2e-55 221.1 412 40.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-55 220.3 413 39.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.0e-55 220.3 413 38.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 4.5e-55 219.2 413 38.0
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.3e-54 217.6 409 40.6
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.9e-54 216.5 422 38.2
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.0e-54 215.7 409 37.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-54 215.7 417 37.9
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 6.5e-54 215.3 413 37.8
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 8.5e-54 214.9 413 37.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 8.5e-54 214.9 414 38.4
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.4e-53 214.2 412 37.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.4e-53 214.2 412 37.9
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.5e-53 213.4 414 38.4
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.2e-53 212.6 416 37.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 5.5e-53 212.2 411 39.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 5.5e-53 212.2 415 40.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 5.5e-53 212.2 416 38.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 9.4e-53 211.5 392 39.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-52 211.1 413 38.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.1e-52 210.3 395 37.7
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-52 210.3 417 37.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.7e-52 209.9 438 35.4
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.6e-52 209.1 412 38.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.9e-52 208.4 418 37.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-51 207.6 407 36.1
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.0e-51 206.5 416 36.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.0e-51 206.5 413 38.3
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.1e-50 204.5 413 37.0
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.0e-50 203.8 420 36.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.3e-50 203.0 414 36.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.7e-50 202.2 416 36.3
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.7e-50 202.2 420 36.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-49 200.7 413 36.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.8e-49 199.9 414 37.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 4.8e-49 199.1 426 36.9
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 8.2e-49 198.4 413 36.8
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.1e-48 198.0 405 35.6
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.8e-48 197.2 414 36.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.1e-48 196.1 413 36.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-47 194.5 412 35.4
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.5e-47 194.1 424 35.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-47 193.7 398 37.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.0e-47 193.7 413 36.1
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.6e-47 193.4 411 37.0
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.4e-47 193.0 416 35.6
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.5e-47 192.6 390 35.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 5.9e-47 192.2 445 34.8
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.9e-47 192.2 413 36.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.3e-46 191.0 446 34.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.7e-46 190.7 415 35.7
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.8e-46 189.5 446 33.9
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.8e-46 189.5 446 33.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.5e-46 188.7 414 34.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 6.5e-46 188.7 361 38.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.6e-44 184.1 422 35.3
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.6e-44 184.1 419 34.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.7e-44 183.3 407 35.6
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.6e-44 183.0 402 35.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.7e-44 182.6 413 35.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.7e-44 182.6 413 34.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.9e-44 181.8 419 34.6
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.3e-43 180.3 414 34.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.3e-43 180.3 413 34.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.0e-43 179.9 410 33.9
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.0e-43 179.9 410 33.9
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.0e-43 179.9 410 33.9
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.9e-43 179.5 418 34.0
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 5.1e-43 179.1 418 34.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 8.8e-43 178.3 411 33.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 8.8e-43 178.3 411 33.1
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-42 177.2 413 35.1
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.6e-42 176.8 408 34.6
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 3.3e-42 176.4 462 32.7
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-42 176.0 413 35.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.4e-42 176.0 413 35.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-41 174.5 408 35.5
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-41 174.1 413 34.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-41 174.1 413 34.9
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.8e-41 173.3 413 34.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 8.2e-41 171.8 418 32.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 8.2e-41 171.8 410 34.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 8.2e-41 171.8 369 36.6
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.1e-40 169.9 414 33.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 4.1e-40 169.5 411 33.1
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.3e-40 169.1 410 34.9
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-39 166.8 435 33.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-39 166.8 199 47.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.5e-39 166.0 418 34.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 5.9e-39 165.6 416 33.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.7e-39 165.2 391 33.5
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.0e-38 164.9 413 34.9
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.2e-38 163.7 391 33.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.2e-37 159.8 165 58.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.2e-36 157.9 194 46.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.1e-36 157.1 189 44.4
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-35 154.5 196 47.4
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.0e-35 153.3 417 31.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.7e-33 147.5 189 45.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-32 142.1 537 28.3
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 5.5e-29 132.5 118 61.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.2e-29 132.1 189 39.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 6.1e-28 129.0 142 46.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.4e-24 115.9 294 33.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 7.0e-24 115.5 295 32.5
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.7e-22 110.9 295 32.2
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 8.5e-22 108.6 125 48.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 4.2e-21 106.3 158 39.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.7e-20 102.8 86 60.5
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-19 101.7 120 56.7
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 3.0e-19 100.1 116 49.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-18 98.2 294 31.3
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-14 84.7 93 49.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.3e-14 84.0 207 30.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.9e-13 80.9 90 47.8
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-12 78.2 166 34.3
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 6.1e-12 75.9 211 32.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.0e-11 75.1 104 44.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.9e-11 72.0 61 67.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.6e-10 70.5 45 84.4
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.4e-08 64.7 47 70.2
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.8e-08 64.3 131 35.9
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.4e-08 62.8 48 58.3
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 7.0e-08 62.4 243 28.0
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 5.9e-07 59.3 125 38.4
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-06 58.5 246 27.2


User provided reference genes

Program Settings