Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.0e-194 683.3 371 100.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.3e-152 541.2 359 81.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.2e-149 532.7 350 82.0
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.3e-146 522.7 345 81.2
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.3e-145 518.8 345 80.3
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.3e-145 518.8 345 81.7
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.7e-145 517.3 345 80.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.3e-144 516.9 345 80.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.7e-144 515.4 345 78.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 8.2e-144 514.2 346 81.8
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 6.9e-143 511.1 344 80.2
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.2e-142 510.4 345 78.3
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.4e-142 508.8 335 80.9
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.5e-142 508.4 345 78.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.7e-141 506.5 345 80.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.2e-141 506.1 345 78.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.4e-140 503.4 347 77.2
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.5e-140 502.7 345 77.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.2e-140 502.3 345 78.3
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 5.5e-140 501.5 345 78.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.6e-139 500.0 345 78.8
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 6.1e-139 498.0 347 78.1
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.0e-138 497.3 345 79.1
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.0e-138 497.3 345 76.8
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.8e-138 496.5 337 78.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.0e-138 495.7 345 76.5
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.9e-138 495.4 345 77.1
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 5.1e-138 495.0 345 78.3
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.1e-138 495.0 345 75.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 8.8e-138 494.2 345 77.7
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.5e-137 492.7 345 75.9
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.7e-136 490.0 341 78.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.2e-136 489.6 319 84.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.2e-136 489.6 345 77.7
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.6e-134 482.6 345 76.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-134 482.6 345 76.2
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 7.7e-134 481.1 345 75.4
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.0e-133 480.7 335 77.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.2e-133 479.6 345 75.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.2e-133 479.6 345 75.4
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.9e-133 479.2 345 75.7
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.8e-133 478.8 345 75.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 6.5e-133 478.0 345 75.1
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 5.5e-132 474.9 345 73.3
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 9.4e-132 474.2 342 75.1
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.6e-131 472.2 341 75.7
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.0e-130 470.7 346 74.0
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.3e-130 469.5 345 72.5
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.3e-130 469.5 370 70.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.0e-130 469.2 315 79.0
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 5.1e-130 468.4 340 73.5
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.6e-129 466.1 341 74.8
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.7e-129 464.9 345 72.5
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 9.7e-129 464.2 348 72.7
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 8.2e-128 461.1 345 71.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.8e-127 459.9 345 70.7
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.4e-127 459.5 340 72.1
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-126 457.2 343 73.2
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.6e-126 456.1 345 73.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.9e-126 454.9 345 70.4
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-125 454.1 345 72.5
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 5.0e-125 451.8 340 71.8
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.6e-123 446.8 343 72.0
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.1e-123 444.9 345 70.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.0e-122 442.6 288 79.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 6.7e-122 441.4 345 71.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.3e-120 437.2 319 74.3
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.7e-120 436.8 341 69.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.7e-120 435.6 399 62.7
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.4e-119 433.7 331 71.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-117 427.2 345 69.3
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-117 426.8 345 70.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.7e-117 426.8 345 68.4
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.8e-117 425.6 345 69.0
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 4.7e-115 418.7 346 67.3
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 6.8e-114 414.8 345 69.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.0e-113 413.3 345 66.7
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.4e-113 412.1 345 66.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.5e-113 411.4 340 67.4
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.8e-113 411.0 345 69.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.3e-112 410.6 345 66.7
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 6.3e-112 408.3 345 67.8
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 8.3e-112 407.9 345 65.5
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.8e-111 406.8 328 68.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.1e-111 406.0 337 66.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.2e-110 404.1 287 74.6
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.7e-109 400.2 346 65.9
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.0e-106 389.4 287 71.1
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 6.8e-106 388.3 345 65.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.5e-105 387.1 345 63.5
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.5e-105 387.1 345 63.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 7.5e-105 384.8 345 61.7
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.3e-104 384.0 261 76.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.9e-104 382.1 373 61.4
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.3e-104 381.3 338 63.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 7.0e-103 378.3 345 61.7
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.2e-102 377.5 319 68.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.5e-102 375.6 333 61.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.3e-101 374.0 347 60.8
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.9e-100 370.2 345 62.0
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.9e-100 370.2 345 60.3
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.9e-100 370.2 345 60.6
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.5e-100 369.8 345 60.6
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 5.6e-100 368.6 367 58.6
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.1e-99 365.2 343 61.2
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.7e-96 357.1 348 57.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.7e-96 357.1 336 60.4
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 5.4e-95 352.1 345 60.9
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.3e-93 346.7 349 57.3
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.0e-93 346.3 350 57.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-90 337.0 348 56.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.1e-90 336.3 293 64.5
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.0e-90 335.9 346 57.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.4e-87 327.4 338 57.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.4e-87 326.6 345 59.4
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.1e-87 325.9 346 56.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-86 324.3 346 57.8
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-86 324.3 346 57.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.5e-86 322.8 348 57.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.6e-86 322.4 347 56.2
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.8e-86 321.6 348 54.9
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-85 319.7 348 56.6
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.5e-84 317.4 312 60.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.3e-82 310.1 348 54.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 4.0e-82 309.3 346 54.6
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.6e-81 306.6 345 52.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.4e-81 306.2 348 49.7
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.7e-80 303.9 343 56.0
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 7.1e-79 298.5 345 50.7
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.6e-78 297.4 344 54.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.3e-77 294.3 346 52.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-75 287.7 347 52.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-75 287.3 342 55.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.8e-74 283.9 263 62.0
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.3e-74 283.5 343 52.8
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-73 281.2 341 52.2
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.5e-73 280.8 345 49.3
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.6e-73 280.0 341 52.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.3e-72 277.7 345 49.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.1e-71 272.7 285 58.9
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-69 268.1 342 50.9
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.9e-69 266.2 284 57.7
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.9e-69 266.2 341 48.4
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-68 264.6 296 56.1
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-68 264.2 270 59.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-68 264.2 303 55.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-64 250.4 289 52.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 9.3e-63 245.0 357 48.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.7e-61 240.7 290 51.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.3e-61 240.4 339 43.4
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.0e-61 240.0 355 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.9e-60 237.3 350 41.7
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 6.4e-56 222.2 343 38.5
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.1e-55 221.5 290 46.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.9e-55 220.7 333 44.1
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 5.1e-53 212.6 138 87.0
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 6.2e-51 205.7 239 52.3
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.9e-47 194.1 226 52.7
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.4e-47 193.7 171 57.3
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.8e-43 180.3 139 71.9
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.6e-41 173.7 194 54.1
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.8e-40 169.9 158 63.9
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.4e-40 168.7 304 42.8
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 9.0e-34 148.7 281 39.9
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.2e-31 139.0 321 37.4
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.1e-26 125.2 289 37.4
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.6e-25 120.6 145 53.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.5e-23 114.0 281 34.5
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.5e-23 114.0 281 34.5
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 7.7e-17 92.4 91 61.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 9.4e-15 85.5 55 85.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.6e-14 83.6 289 31.8
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 6.1e-14 82.8 111 51.4
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.4e-12 76.6 54 75.9
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.9e-07 61.2 95 47.4


User provided reference genes

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