Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-125 451.8 218 100.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-99 366.7 222 79.7
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-99 366.7 222 79.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.2e-99 366.7 220 80.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.4e-95 352.4 220 75.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 9.2e-95 350.5 220 75.5
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.6e-94 349.7 218 75.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 3.3e-92 342.0 220 74.1
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 7.3e-92 340.9 220 72.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.1e-91 339.3 220 74.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.6e-91 338.6 220 71.8
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.1e-90 337.0 287 62.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.5e-89 333.2 224 72.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.3e-88 330.1 220 72.3
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-87 327.0 225 72.0
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.4e-87 326.6 218 71.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.9e-87 326.2 220 71.4
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.9e-87 326.2 219 71.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 4.1e-87 325.1 219 71.2
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.4e-87 324.7 218 71.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.2e-86 323.6 222 70.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.6e-86 323.2 220 71.8
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.7e-86 322.4 218 71.1
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.5e-86 322.0 220 69.5
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 3.5e-86 322.0 218 67.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.5e-86 322.0 220 71.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.6e-86 321.6 220 69.5
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.0e-86 321.2 218 70.2
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 7.8e-86 320.9 220 72.3
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.0e-85 320.5 220 70.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.7e-85 319.7 218 69.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.3e-85 319.3 223 71.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.6e-85 317.8 220 69.5
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 8.6e-85 317.4 220 69.5
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.1e-84 317.0 218 68.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.5e-84 316.6 220 69.1
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.5e-84 315.8 220 70.0
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 4.3e-84 315.1 218 67.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 4.3e-84 315.1 218 69.3
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.3e-84 315.1 222 68.0
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.6e-84 314.7 220 68.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.3e-84 314.3 218 67.9
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.6e-83 313.2 218 69.3
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.6e-83 313.2 221 68.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.6e-83 312.0 221 68.3
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.6e-83 312.0 220 67.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.6e-83 312.0 220 68.6
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.2e-83 311.2 218 67.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 8.1e-83 310.8 219 68.0
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.1e-82 310.5 219 68.0
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.8e-82 309.7 221 68.8
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.8e-82 309.7 220 68.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.3e-82 309.3 218 67.0
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.1e-82 308.9 218 67.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.0e-82 308.5 218 67.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.0e-82 308.5 220 66.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.0e-82 308.5 220 64.5
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 5.2e-82 308.1 220 66.8
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 6.8e-82 307.8 220 64.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 8.9e-82 307.4 219 67.1
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 8.9e-82 307.4 220 68.6
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.2e-81 307.0 218 68.3
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.2e-81 307.0 220 66.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.2e-81 307.0 218 66.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.5e-81 306.6 218 67.0
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.0e-81 306.2 198 70.7
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.0e-81 306.2 221 66.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 5.8e-81 304.7 219 66.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 7.6e-81 304.3 220 65.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 9.9e-81 303.9 245 62.0
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.3e-80 303.5 219 67.6
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.7e-80 303.1 224 65.6
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.2e-80 302.8 219 66.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.2e-80 302.8 219 66.7
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.8e-80 302.0 219 63.9
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 4.9e-80 301.6 221 65.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 6.4e-80 301.2 221 64.7
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 8.4e-80 300.8 224 65.2
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.1e-79 300.4 221 65.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.4e-79 300.1 221 66.1
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-79 300.1 224 65.2
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.4e-79 300.1 221 66.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.2e-79 298.9 224 64.7
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.2e-79 298.9 218 65.1
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 9.2e-79 297.4 219 62.6
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.6e-78 296.6 218 66.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.1e-78 296.2 218 66.1
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-77 293.9 218 64.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-77 293.1 218 64.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-77 292.7 220 64.5
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.0e-77 292.4 218 64.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.9e-77 292.0 223 62.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.1e-77 291.6 219 64.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.6e-77 291.2 218 63.3
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 6.6e-77 291.2 218 63.8
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.1e-76 290.4 218 63.3
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-76 290.4 205 66.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.3e-76 288.9 218 63.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.6e-76 288.1 224 62.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 5.6e-76 288.1 220 63.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-75 287.0 218 62.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-75 287.0 218 64.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.1e-75 286.2 218 63.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.1e-75 286.2 219 63.0
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.7e-75 285.0 221 63.8
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 4.7e-75 285.0 218 64.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 6.2e-75 284.6 218 64.2
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 8.1e-75 284.3 218 64.2
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 8.1e-75 284.3 218 64.2
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 8.1e-75 284.3 218 62.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.1e-75 284.3 218 63.3
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-74 283.5 218 61.9
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.8e-74 283.1 167 77.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.4e-74 282.7 259 55.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 6.9e-74 281.2 218 64.7
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 8.9e-74 280.8 218 61.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.9e-74 280.8 221 62.9
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.5e-73 280.0 218 61.0
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-73 280.0 218 61.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.5e-73 280.0 218 61.0
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.0e-73 279.6 218 61.9
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.4e-73 278.5 224 59.4
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.8e-73 278.1 291 54.0
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.6e-73 277.7 218 60.6
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-72 276.9 219 60.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.3e-72 276.9 219 60.7
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.3e-72 276.9 219 62.6
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.7e-72 276.6 219 62.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.7e-72 276.6 222 60.4
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.9e-72 275.8 218 62.8
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-72 275.8 219 63.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-72 275.8 221 62.0
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.9e-72 275.8 221 62.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.9e-72 275.8 219 61.6
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-71 273.1 192 75.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.6e-70 270.0 226 61.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.7e-70 269.2 173 70.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.5e-68 262.7 218 57.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.3e-68 261.2 217 58.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 8.1e-67 257.7 221 58.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 9.0e-66 254.2 333 43.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.9e-64 249.2 221 56.1
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.0e-61 240.7 217 52.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 6.9e-58 228.0 460 34.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.1e-55 220.7 173 59.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.2e-48 196.4 138 74.6
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 7.9e-46 188.0 104 82.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.9e-45 185.7 103 80.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 6.7e-45 184.9 103 81.6
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.5e-41 172.2 146 61.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.0e-40 171.0 102 75.5
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 6.1e-38 161.8 103 71.8
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 5.5e-31 138.7 195 40.5
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 7.2e-31 138.3 158 47.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.0e-29 132.9 115 54.8
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.0e-28 130.2 188 41.0
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-26 124.4 99 57.6
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.8e-26 123.6 218 39.4
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.0e-24 117.9 122 47.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 6.5e-24 115.2 228 34.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 5.5e-23 112.1 121 49.6
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.6e-22 109.4 179 34.6
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-21 107.5 58 81.0
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.7e-17 91.7 97 49.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.4e-12 75.9 52 61.5
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.1e-07 61.2 52 57.7


User provided reference genes

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