Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.5e-89 330.5 167 100.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-33 147.1 117 66.7
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.4e-33 145.6 117 66.7
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.9e-29 132.1 117 57.3
Actinidia36105 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.8e-29 131.0 123 65.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 8.8e-29 131.0 117 58.1
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.8e-26 123.2 110 59.1
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.4e-26 122.9 117 59.0
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-25 120.6 117 55.6
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.5e-23 112.8 117 53.8
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.8e-21 106.7 114 51.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.9e-21 105.5 82 62.2
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.0e-20 103.2 74 66.2
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 2.6e-20 102.8 87 60.9
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.2e-19 99.8 79 65.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.2e-19 97.8 81 59.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.2e-19 97.8 113 51.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.1e-18 97.4 92 57.6
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.0e-18 94.7 98 55.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 7.0e-18 94.7 90 50.0
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.6e-17 93.6 99 47.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.0e-17 93.2 120 45.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-17 93.2 91 56.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.6e-17 92.8 87 58.6
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.6e-17 92.8 105 54.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.5e-17 92.0 117 44.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 4.5e-17 92.0 88 51.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.5e-17 92.0 89 53.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.9e-17 91.7 117 44.4
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.0e-16 90.9 81 61.7
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.2e-16 89.7 117 44.4
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.2e-16 89.7 122 48.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.9e-16 89.4 112 50.0
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.8e-16 89.0 76 55.3
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.0e-16 88.6 117 43.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 6.5e-16 88.2 105 47.6
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.1e-15 87.4 82 56.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.1e-15 87.4 117 45.3
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.5e-15 87.0 88 58.0
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.5e-15 87.0 111 45.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.9e-15 86.7 100 48.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.5e-15 86.3 91 56.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.5e-15 86.3 85 56.5
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.2e-15 85.9 111 41.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.2e-15 85.9 81 54.3
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-15 85.5 81 54.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.2e-15 85.5 81 54.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.2e-15 85.5 98 52.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 5.5e-15 85.1 118 44.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.6e-14 83.6 90 50.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.6e-14 83.6 122 43.4
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.1e-14 83.2 89 47.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.1e-14 83.2 114 43.9
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.7e-14 82.8 87 51.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.6e-14 82.4 87 51.7
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.7e-14 82.0 99 44.4
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.7e-14 82.0 87 51.7
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.1e-14 81.6 111 40.5
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 6.1e-14 81.6 90 44.4
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 6.1e-14 81.6 112 46.4
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 8.0e-14 81.3 111 44.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 8.0e-14 81.3 91 51.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 8.0e-14 81.3 88 51.1
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 8.0e-14 81.3 89 51.7
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.0e-13 80.9 95 47.4
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.0e-13 80.9 118 39.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.0e-13 80.9 87 52.9
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.4e-13 80.5 92 48.9
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.4e-13 80.5 87 50.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.4e-13 80.5 87 50.6
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.8e-13 80.1 112 44.6
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-13 80.1 90 51.1
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.3e-13 79.7 75 54.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.3e-13 79.7 71 62.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.0e-13 79.3 105 43.8
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.0e-13 79.3 78 52.6
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.0e-13 79.3 74 55.4
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 3.0e-13 79.3 89 49.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.0e-13 79.3 91 49.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.0e-13 79.0 91 49.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 4.0e-13 79.0 87 50.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.2e-13 78.6 86 47.7
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.2e-13 78.6 90 50.0
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 6.7e-13 78.2 87 49.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.7e-13 78.2 75 53.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.7e-13 78.2 78 53.8
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 6.7e-13 78.2 104 45.2
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.8e-13 77.8 100 49.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 8.8e-13 77.8 112 40.2
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.2e-12 77.4 98 46.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-12 77.4 86 51.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-12 77.4 83 51.8
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.5e-12 77.0 78 51.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.0e-12 76.6 82 47.6
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-12 76.3 86 46.5
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-12 76.3 86 46.5
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.6e-12 76.3 74 54.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.3e-12 75.9 105 41.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.3e-12 75.9 105 41.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.3e-12 75.9 75 52.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.3e-12 75.9 74 51.4
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.7e-12 75.1 121 42.1
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 7.5e-12 74.7 73 54.8
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 9.7e-12 74.3 114 38.6
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.3e-11 73.9 118 41.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.7e-11 73.6 71 56.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.2e-11 73.2 90 47.8
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.2e-11 73.2 116 39.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.2e-11 73.2 87 47.1
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.8e-11 72.8 92 43.5
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.8e-11 72.0 111 39.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 6.3e-11 71.6 125 39.2
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 6.3e-11 71.6 125 39.2
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.2e-11 71.2 118 39.8
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 8.2e-11 71.2 115 40.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.2e-11 71.2 64 62.5
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 8.2e-11 71.2 121 38.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 8.2e-11 71.2 67 53.7
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.1e-10 70.9 79 51.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.1e-10 70.9 67 53.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.8e-10 70.1 114 40.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.4e-10 69.7 125 38.4
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.1e-10 69.3 99 41.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.1e-10 68.9 125 37.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.1e-10 68.9 125 37.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.1e-10 68.9 90 45.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 9.1e-10 67.8 122 37.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 9.1e-10 67.8 94 40.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-09 67.4 80 46.2
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-09 67.4 80 46.2
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.2e-09 67.4 77 50.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.6e-09 67.0 79 45.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.6e-09 67.0 67 49.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.0e-09 66.6 80 46.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.0e-09 66.6 79 46.8
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.0e-09 66.6 75 49.3
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.7e-09 66.2 71 47.9
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.7e-09 66.2 80 50.0
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 4.5e-09 65.5 71 46.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.5e-09 65.5 103 37.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 5.9e-09 65.1 79 46.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.9e-09 65.1 124 37.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 7.7e-09 64.7 113 35.4
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.3e-08 63.9 93 41.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.3e-08 63.9 79 44.3
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.2e-08 63.2 100 38.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.9e-08 62.8 79 43.0
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.8e-08 62.4 74 45.9
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.8e-08 62.4 79 43.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.5e-08 61.6 106 38.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-06 57.4 87 41.4


User provided reference genes

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