Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.4e-148 527.3 255 100.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.9e-145 518.1 255 98.4
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.9e-138 493.8 255 92.9
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 7.9e-138 493.8 255 92.9
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 5.1e-137 491.1 255 92.9
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 2.8e-135 485.3 256 91.4
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.5e-133 479.6 255 89.4
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 5.8e-133 477.6 255 90.2
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.3e-132 476.5 255 89.4
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.7e-132 476.1 255 89.0
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 2.9e-132 475.3 255 90.2
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 3.8e-132 474.9 253 90.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 3.8e-132 474.9 255 89.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 88.6
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 6.4e-132 474.2 255 88.6
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 6.4e-132 474.2 255 90.2
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 8.4e-132 473.8 255 90.6
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 89.0
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.5e-131 472.2 255 89.0
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.5e-131 472.2 255 89.4
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 89.4
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 90.2
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 89.0
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 89.4
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.6e-130 469.5 255 89.0
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 88.2
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 87.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 89.4
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 88.6
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 88.6
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 87.8
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 7.9e-130 467.2 255 87.5
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.0e-129 466.8 254 87.8
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.8e-129 466.1 255 87.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.8e-129 466.1 254 87.4
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.3e-129 465.7 255 87.5
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 88.2
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 3.9e-129 464.9 254 86.6
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.1
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 6.7e-129 464.2 255 87.8
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 6.7e-129 464.2 255 86.3
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 88.2
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.9e-128 462.6 256 87.5
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 87.8
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 85.9
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 86.3
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 5.6e-128 461.1 256 87.1
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 86.3
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.6e-127 459.5 253 86.6
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 87.5
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 85.5
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 86.7
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 4.8e-127 458.0 253 87.7
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 6.2e-127 457.6 256 87.1
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 87.1
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 84.3
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 87.5
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.1e-126 456.8 253 85.8
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.4e-126 456.4 256 85.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.4e-126 456.4 256 85.9
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.4e-126 456.4 306 75.2
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.8e-126 456.1 257 86.0
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 3.1e-126 455.3 256 85.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 3.1e-126 455.3 256 86.3
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.0e-126 454.9 258 85.7
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 86.3
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 5.3e-126 454.5 256 86.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 6.9e-126 454.1 253 87.4
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 86.3
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 9.0e-126 453.8 253 86.6
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 86.7
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 85.9
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 2.0e-125 452.6 255 85.5
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 3.4e-125 451.8 253 86.6
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 3.4e-125 451.8 253 87.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 3.4e-125 451.8 253 87.0
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.9
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.5
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 4.5e-125 451.4 255 84.3
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 5.8e-125 451.1 253 86.6
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 7.6e-125 450.7 256 85.5
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 7.6e-125 450.7 256 85.5
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 7.6e-125 450.7 255 85.5
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.0e-124 450.3 256 85.5
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-124 449.9 256 85.9
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 85.5
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 3.8e-124 448.4 256 84.8
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 6.5e-124 447.6 255 85.1
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 84.7
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 85.9
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 4.2e-123 444.9 253 85.8
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 7.1e-123 444.1 256 84.4
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 9.3e-123 443.7 253 85.8
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 9.3e-123 443.7 255 82.7
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.2e-122 443.4 255 85.5
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 1.6e-122 443.0 255 83.5
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.6e-122 443.0 255 84.3
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 83.5
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.5e-122 441.8 252 86.1
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.5e-122 441.8 252 86.1
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 4.6e-122 441.4 255 82.4
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.0e-121 440.3 283 78.4
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.7e-121 437.2 262 82.1
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 3.3e-120 435.3 257 81.3
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.3e-119 433.3 257 80.5
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.1e-118 430.3 256 80.5
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 4.1e-118 428.3 270 75.9
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.4e-117 425.2 294 74.1
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 4.5e-117 424.9 240 81.7
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 7.7e-117 424.1 255 81.6
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.1e-115 420.2 219 91.8
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.4e-113 413.3 239 84.1
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 2.0e-112 409.5 267 76.0
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 5.7e-112 407.9 239 82.8
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.8e-108 395.2 229 79.9
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.4e-107 393.3 230 80.0
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.0e-105 387.1 255 77.6
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 5.1e-105 384.8 260 75.0
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.1e-104 383.6 232 75.9
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.0e-104 382.9 250 72.8
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.6e-104 382.5 238 74.8
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.3e-104 382.1 238 75.6
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 4.8e-103 378.3 319 63.6
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 9.1e-102 374.0 232 77.6
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.6e-101 372.5 255 74.5
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.1e-99 367.1 232 77.6
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.5e-99 366.7 200 85.5
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 2.1e-98 362.8 258 69.4
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 3.3e-96 355.5 258 67.8
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.4e-94 350.1 239 74.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 3.1e-86 322.4 249 67.5
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 5.5e-83 311.6 160 91.9
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-82 310.5 161 91.3
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 2.7e-82 309.3 162 87.7
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 8.8e-81 304.3 248 59.3
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-78 297.4 285 59.6
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-77 293.9 171 84.2
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-75 287.0 201 71.1
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.2e-75 285.4 158 86.7
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.2e-72 277.3 162 84.0
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 7.5e-72 274.6 232 53.4
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-64 250.4 268 54.1
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.8e-57 226.9 117 90.6
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 6.8e-57 224.9 135 78.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 9.8e-56 221.1 116 91.4
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.0e-49 199.1 228 42.1
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 6.8e-49 198.4 101 95.0
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 2.4e-46 189.9 121 76.9
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.8e-45 184.9 100 89.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.1e-43 181.0 165 60.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.5e-43 180.6 211 46.4
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 2.0e-40 170.2 100 82.0
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 3.0e-36 156.4 83 84.3
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.9e-36 156.0 89 80.9
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 6.6e-36 155.2 84 82.1
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-35 152.5 83 84.3
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.1e-34 148.3 89 77.5
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.8e-33 147.1 89 76.4
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 6.9e-33 145.2 91 79.1
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.6e-32 143.3 89 75.3
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.4e-32 142.5 75 85.3
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.9e-30 137.1 81 79.0
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.2e-30 136.3 81 79.0
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.7e-29 133.3 84 78.6
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 80.0
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 80.0
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 80.0
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 80.0
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.3e-28 131.0 81 75.3
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.0e-28 129.8 75 78.7
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.6e-27 124.8 75 76.0
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.8e-25 120.6 71 78.9
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.8e-25 120.6 76 75.0
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 2.4e-25 120.2 82 75.6
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 5.1e-12 75.9 55 69.1
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 8.7e-12 75.1 41 85.4
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 1.4e-06 57.8 30 90.0


User provided reference genes

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