Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia12488 Actinidia chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1965.7 1108 100.0
CSS0042378 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 0.0e+00 1322.8 1109 71.7
CSS0023493 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 0.0e+00 1293.9 1148 69.2
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 0.0e+00 1253.0 1107 66.9
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 0.0e+00 1232.2 1140 63.9
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 0.0e+00 1146.3 1117 63.7
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 0.0e+00 1109.7 1174 61.2
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 2.6e-278 962.6 1156 55.2
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.3e-277 960.3 1153 56.3
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 1.5e-270 936.8 1174 54.1
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 1.3e-266 923.7 1126 57.8
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 2.4e-255 886.3 1070 54.1
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 2.2e-253 879.8 1188 52.6
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 1.1e-252 877.5 1206 52.7
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 7.4e-249 864.8 1130 50.2
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 2.1e-248 863.2 1130 51.7
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 8.4e-245 851.3 1094 52.6
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.3e-242 844.0 1137 51.7
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 1.5e-241 840.5 1130 52.1
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 1.1e-239 834.3 913 57.4
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 2.4e-239 833.2 1220 46.8
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 6.9e-239 831.6 1140 50.8
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 2.6e-238 829.7 918 56.5
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 1.1e-236 824.3 1192 48.6
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 1.4e-236 823.9 1245 49.9
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 2.9e-229 799.7 1201 49.4
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 3.2e-228 796.2 918 55.4
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 1.2e-227 794.3 1213 47.6
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 7.4e-225 785.0 1162 46.3
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 9.7e-225 784.6 1154 46.2
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.8e-224 783.1 1141 52.0
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.8e-223 780.4 1121 52.6
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 1.7e-221 773.9 1205 48.6
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.5e-220 770.0 1311 44.9
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 1.2e-219 767.7 1147 48.8
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 2.7e-219 766.5 1147 48.0
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 6.1e-219 765.4 1232 45.4
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 2.3e-218 763.5 1163 46.6
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 2.0e-217 760.4 1157 47.5
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 7.4e-217 758.4 948 52.6
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 1.7e-216 757.3 1144 49.5
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 4.8e-216 755.7 1206 44.8
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 3.1e-215 753.1 1185 46.9
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 5.3e-215 752.3 1235 46.0
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 7.0e-215 751.9 1124 48.2
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.6e-214 750.7 1139 45.9
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.7e-213 747.3 918 53.8
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 2.9e-213 746.5 1222 46.1
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 8.5e-213 745.0 1183 48.3
TAR627G1072 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.1e-212 744.6 640 60.5
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 1.5e-212 744.2 1139 49.3
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 1.9e-212 743.8 1224 45.9
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 3.2e-212 743.0 1148 48.5
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 2.6e-209 733.4 1183 43.4
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 3.3e-209 733.0 1203 43.9
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 5.7e-209 732.3 1008 48.8
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 2.2e-208 730.3 1134 47.8
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 2.4e-207 726.9 1143 47.9
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 4.1e-207 726.1 1112 49.8
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 9.1e-207 724.9 1141 50.0
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.7e-206 721.8 1265 46.3
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 1.7e-205 720.7 1145 47.7
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 2.9e-205 719.9 1177 46.1
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 5.0e-205 719.2 1148 45.2
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 8.5e-205 718.4 1074 47.3
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 1.1e-204 718.0 1154 44.5
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 1.9e-204 717.2 1127 49.0
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.8e-202 710.7 1207 43.4
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 1.8e-202 710.7 1224 45.5
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 5.2e-202 709.1 1261 45.4
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 4.1e-199 699.5 1159 41.6
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.3e-197 694.5 1266 45.1
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.5e-196 691.0 1107 41.6
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 4.2e-196 689.5 1144 46.6
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.5e-193 681.0 1264 44.7
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 2.2e-192 677.2 1058 50.6
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 7.8e-190 668.7 1198 43.2
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.3e-188 662.1 1359 41.9
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 1.4e-186 657.9 1168 40.6
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 3.0e-186 656.8 1156 45.6
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 4.0e-186 656.4 1158 46.0
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 6.8e-186 655.6 1135 42.8
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 3.4e-185 653.3 1126 44.8
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 2.9e-184 650.2 1295 42.4
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 9.2e-183 645.2 1133 44.0
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 3.9e-181 639.8 1203 38.8
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 1.2e-177 628.2 930 42.7
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 2.6e-177 627.1 1088 40.9
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 5.8e-177 625.9 1198 43.5
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 8.6e-173 612.1 1144 41.1
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 8.6e-173 612.1 1079 40.9
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 1.1e-172 611.7 1159 41.7
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 1.9e-172 610.9 1173 38.7
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 3.3e-172 610.1 1190 41.3
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.2e-171 608.2 1079 40.7
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 1.1e-170 605.1 1209 42.8
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 6.8e-170 602.4 1184 38.4
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 6.8e-170 602.4 1196 38.0
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 1.5e-169 601.3 1184 38.3
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 1.5e-169 601.3 1184 38.3
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 9.9e-169 598.6 1180 37.6
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 9.9e-169 598.6 1180 37.6
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 1.3e-168 598.2 1408 37.2
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 5.6e-164 582.8 1188 37.8
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 8.9e-162 575.5 1161 38.8
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 1.2e-161 575.1 1156 38.7
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 9.9e-161 572.0 1165 38.5
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 3.0e-157 560.5 542 53.7
Actinidia27020 Actinidia chinensis HOM05D003463 ORTHO05D026297 2.5e-156 557.4 497 85.3
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 2.8e-155 553.9 929 39.3
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 2.4e-154 550.8 546 51.6
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 1.8e-130 471.5 549 48.3
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 3.9e-125 453.8 547 47.2
SHI10284 Sapria himalayana HOM05D003463 ORTHO05D004206 4.3e-124 450.3 1170 36.8
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 2.1e-118 431.4 561 45.1
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 5.3e-114 416.8 565 44.4
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 4.8e-107 393.7 1005 35.4
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 3.7e-83 314.3 266 59.8
TPR.G33076 Trifolium pratense HOM05D003463 ORTHO05D004206 5.0e-80 303.9 922 36.0
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 2.3e-77 295.0 330 47.0
HPP92_004145 Vanilla planifolia HOM05D003463 ORTHO05D004206 7.0e-74 283.5 1113 34.0
Actinidia27019 Actinidia chinensis HOM05D003463 ORTHO05D004206 7.8e-73 280.0 156 91.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.1e-49 202.2 252 45.6
Lj1C750T6 Lonicera japonica HOM05D003463 ORTHO05D004206 2.7e-49 201.8 134 73.9
unitig_8.g4613 Utricularia gibba HOM05D003463 ORTHO05D004206 8.1e-46 190.3 166 56.6
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 1.1e-45 189.9 719 27.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 5.8e-36 157.5 152 53.9
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 9.9e-36 156.8 145 56.6
Aa31LG9G1440 Aethionema arabicum HOM05D003463 ORTHO05D000047 8.7e-32 143.7 211 42.2
Lj1P750T17 Lonicera japonica HOM05D003463 ORTHO05D004206 1.4e-29 136.3 182 53.8
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 3.1e-29 135.2 720 24.9
Lj1A750T32 Lonicera japonica HOM05D003463 ORTHO05D004206 1.5e-28 132.9 352 33.8
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 1.9e-23 115.9 142 45.8
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 1.9e-23 115.9 142 45.8
GSVIVG01026194001 Vitis vinifera HOM05D003463 ORTHO05D004206 7.6e-20 104.0 112 50.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.1e-18 100.1 137 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 2.1e-17 95.9 641 22.0
Psat3g206120 Pisum sativum HOM05D003463 ORTHO05D004206 2.1e-14 85.9 113 39.8
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 1.5e-12 79.7 501 23.0
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 1.5e-12 79.7 501 23.0
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 1.0e-11 77.0 182 28.0
Psat7g124560 Pisum sativum HOM05D003463 ORTHO05D030491 1.0e-11 77.0 91 47.3
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.7e-11 76.3 303 26.4
unitig_8.g4612 Utricularia gibba HOM05D003463 ORTHO05D026297 1.7e-11 76.3 127 40.9
TAR627G0797 Trochodendron aralioides HOM05D003463 ORTHO05D026297 3.8e-11 75.1 122 40.2
Lj1A751G18 Lonicera japonica HOM05D014456 ORTHO05D011476 1.6e-09 69.7 80 60.0
SHI05209 Sapria himalayana HOM05D000624 ORTHO05D004206 7.9e-09 67.4 77 49.4
Nn1g00832 Nelumbo nucifera HOM05D003463 ORTHO05D026297 2.5e-07 62.4 83 48.2
SHI35802 Sapria himalayana HOM05D000049 ORTHO05D000027 1.3e-06 60.1 88 38.6


User provided reference genes

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