Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia11221 Actinidia chinensis HOM05D002880 ORTHO05D038078 2.6e-65 251.9 125 100.0
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 8.0e-27 124.0 65 89.2
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 8.9e-26 120.6 66 90.9
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 1.2e-25 120.2 66 90.9
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 1.2e-25 120.2 66 90.9
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 1.2e-25 120.2 65 86.2
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 2.6e-25 119.0 65 83.1
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 2.6e-25 119.0 65 86.2
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 4.4e-25 118.2 66 87.9
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 4.4e-25 118.2 66 87.9
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 5.8e-25 117.9 66 86.4
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 7.5e-25 117.5 66 86.4
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 7.5e-25 117.5 65 83.1
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 9.8e-25 117.1 65 83.1
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.8e-25 117.1 66 87.9
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.8e-25 117.1 66 87.9
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.8e-25 117.1 66 87.9
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 2.2e-24 115.9 66 86.4
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 2.9e-24 115.5 66 84.8
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 2.9e-24 115.5 66 84.8
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 3.7e-24 115.2 66 83.3
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 3.7e-24 115.2 67 82.1
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 4.9e-24 114.8 66 84.8
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 4.9e-24 114.8 68 82.4
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 4.9e-24 114.8 66 81.8
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 6.4e-24 114.4 66 81.8
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 6.4e-24 114.4 66 81.8
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 6.4e-24 114.4 66 84.8
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 6.4e-24 114.4 66 81.8
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 6.4e-24 114.4 66 83.3
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 1.1e-23 113.6 66 83.3
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 1.1e-23 113.6 65 80.0
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 1.4e-23 113.2 66 81.8
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.9e-23 112.8 66 81.8
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.9e-23 112.8 65 78.5
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.9e-23 112.8 66 80.3
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 1.9e-23 112.8 66 80.3
Actinidia17493 Actinidia chinensis HOM05D002880 ORTHO05D003450 2.4e-23 112.5 66 84.8
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 2.4e-23 112.5 68 77.9
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 2.4e-23 112.5 68 77.9
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 2.4e-23 112.5 80 70.0
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 2.4e-23 112.5 66 83.3
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 3.2e-23 112.1 65 78.5
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 3.2e-23 112.1 66 83.3
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 4.1e-23 111.7 66 80.3
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 4.1e-23 111.7 66 80.3
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 4.1e-23 111.7 66 80.3
Actinidia17497 Actinidia chinensis HOM05D002880 ORTHO05D003450 5.4e-23 111.3 66 83.3
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 5.4e-23 111.3 66 80.3
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 5.4e-23 111.3 66 81.8
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 5.4e-23 111.3 66 81.8
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 5.4e-23 111.3 66 78.8
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 5.4e-23 111.3 66 80.3
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.0e-23 110.9 66 80.3
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.0e-23 110.9 66 80.3
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 7.0e-23 110.9 66 80.3
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 7.0e-23 110.9 66 80.3
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 7.0e-23 110.9 66 80.3
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 9.2e-23 110.5 66 78.8
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 9.2e-23 110.5 66 81.8
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 1.2e-22 110.2 66 78.8
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 1.2e-22 110.2 66 78.8
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 1.2e-22 110.2 66 78.8
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.2e-22 110.2 66 78.8
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 1.2e-22 110.2 66 77.3
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 1.2e-22 110.2 66 80.3
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 1.6e-22 109.8 82 67.1
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 1.6e-22 109.8 66 77.3
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 1.6e-22 109.8 66 78.8
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 2.0e-22 109.4 66 77.3
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 2.0e-22 109.4 66 80.3
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 2.0e-22 109.4 66 81.8
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 2.0e-22 109.4 66 81.8
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 3.5e-22 108.6 66 80.3
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 3.5e-22 108.6 66 80.3
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 3.5e-22 108.6 66 77.3
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 3.5e-22 108.6 66 77.3
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 4.6e-22 108.2 66 80.3
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 4.6e-22 108.2 66 80.3
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 7.8e-22 107.5 65 75.4
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 7.8e-22 107.5 66 77.3
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.0e-21 107.1 67 80.6
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 1.3e-21 106.7 66 77.3
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 2.3e-21 105.9 66 75.8
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 2.3e-21 105.9 67 80.6
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 3.0e-21 105.5 66 78.8
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 3.9e-21 105.1 66 77.3
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 6.6e-21 104.4 67 74.6
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 6.6e-21 104.4 65 75.4
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 8.6e-21 104.0 66 77.3
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 8.6e-21 104.0 67 80.6
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 1.5e-20 103.2 66 74.2
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 1.5e-20 103.2 67 79.1
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.9e-20 102.8 67 73.1
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 1.9e-20 102.8 67 79.1
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.5e-20 102.4 66 75.8
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 2.5e-20 102.4 66 75.8
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 3.3e-20 102.1 67 79.1
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 3.3e-20 102.1 66 72.7
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 3.3e-20 102.1 66 74.2
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 4.3e-20 101.7 67 73.1
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 5.6e-20 101.3 66 74.2
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 5.6e-20 101.3 66 74.2
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 5.6e-20 101.3 66 74.2
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 5.6e-20 101.3 66 74.2
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 5.6e-20 101.3 66 74.2
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 5.6e-20 101.3 66 74.2
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 5.6e-20 101.3 65 75.4
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 2.1e-19 99.4 66 72.7
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 2.1e-19 99.4 65 72.3
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 2.8e-19 99.0 66 69.7
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 3.6e-19 98.6 65 73.8
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 3.6e-19 98.6 65 73.8
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 3.6e-19 98.6 65 73.8
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 3.6e-19 98.6 65 73.8
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 3.6e-19 98.6 83 59.0
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 6.2e-19 97.8 66 69.7
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.4e-18 96.7 66 72.7
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 5.2e-18 94.7 94 50.0
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 5.2e-18 94.7 66 71.2
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 2.0e-17 92.8 67 68.7
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.6e-17 92.4 67 71.6
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 2.6e-17 92.4 71 57.7
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 7.5e-17 90.9 70 64.3
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.3e-16 90.1 72 59.7
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 1.3e-16 90.1 68 61.8
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 2.9e-16 89.0 70 62.9
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 3.5e-14 82.0 67 56.7
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 7.8e-14 80.9 46 84.8
Nitab4.5_0026560g0010 Nicotiana tabacum HOM05D002880 ORTHO05D003450 7.8e-14 80.9 46 84.8
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 1.1e-12 77.0 112 39.3
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 3.3e-12 75.5 39 89.7
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 2.6e-09 65.9 65 49.2
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 4.1e-07 58.5 46 54.3
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 4.1e-07 58.5 112 31.2


User provided reference genes

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