Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia06768 Actinidia chinensis HOM05D004184 ORTHO05D004863 9.2e-40 166.4 82 100.0
CSS0014649 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 4.5e-18 94.4 58 84.5
Rhsim03G0120100 Rhododendron simsii HOM05D004184 ORTHO05D004863 4.5e-18 94.4 58 84.5
Rhsim09G0151300 Rhododendron simsii HOM05D004184 ORTHO05D004863 4.5e-18 94.4 58 84.5
vmacro04867 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 4.5e-18 94.4 58 84.5
Atru.chr12.761 Acer truncatum HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
Atru.chr12.785 Acer truncatum HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
ECA238G0827 Erigeron canadensis HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
Migut.N02593 Erythranthe guttata HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
HanXRQChr16g0532931 Helianthus annuus HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
Lalb_Chr18g0055181 Lupinus albus HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
Oeu056307.1 Olea europaea HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
TAR369G0716 Trochodendron aralioides HOM05D004184 ORTHO05D004863 5.8e-18 94.0 58 84.5
DCAR_019101 Daucus carota HOM05D004184 ORTHO05D004863 7.6e-18 93.6 58 84.5
TWI53G0713 Tripterygium wilfordii HOM05D004184 ORTHO05D004863 7.6e-18 93.6 58 84.5
CSS0007140 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
CSS0037040 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
FvH4_6g15950 Fragaria vesca HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
FAN02G1153 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
FAN02G3659 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
FAN05G1209 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
FAN09G4380 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
FAN14G0292 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
Psat5g100120 Pisum sativum HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 84.5
RcHm_v2.0_Chr3g0469651 Rosa chinensis HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
TPR.G25376 Trifolium pratense HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 84.5
TAR623G0434 Trochodendron aralioides HOM05D004184 ORTHO05D004863 1.3e-17 92.8 58 82.8
Atru.chr3.3614 Acer truncatum HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
ATR0665G147 Amborella trichopoda HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
AT5G42300 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
EL10Ac6g13388 Beta vulgaris HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
EL10Ac6g15231 Beta vulgaris HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
EL10Ac9g22532 Beta vulgaris HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
CARHR284900 Cardamine hirsuta HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
CiPaw.13G114000 Carya illinoinensis HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
Ciclev10033494m.g Citrus clementina HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
Eucgr.J00924 Eucalyptus grandis HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
Oeu013466.1 Olea europaea HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
Prupe.6G102700 Prunus persica HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
QL07p044373 Quercus lobata HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
Sc20g0001810 Simmondsia chinensis HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
THA.LOC109117042 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
THA.LOC109117094 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.7e-17 92.4 58 82.8
Duzib106G2042 Durio zibethinus HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
Duzib114G0898 Durio zibethinus HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
Gohir.A06G167700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
Gohir.D06G175000 Gossypium hirsutum HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
Gohir.D06G175100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
Gorai.010G205400 Gossypium raimondii HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
Gorai.010G205500 Gossypium raimondii HOM05D004184 ORTHO05D004863 2.2e-17 92.0 58 82.8
PSO063G1298 Papaver somniferum HOM05D004184 ORTHO05D004863 2.2e-17 92.0 57 84.2
PSO339G3297 Papaver somniferum HOM05D004184 ORTHO05D004863 2.2e-17 92.0 57 84.2
PSO384G0873 Papaver somniferum HOM05D004184 ORTHO05D004863 2.2e-17 92.0 57 84.2
arahy.Tifrunner.gnm1.ann1.97XRIQ Arachis hypogaea HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
arahy.Tifrunner.gnm1.ann1.AT8ALT Arachis hypogaea HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
arahy.Tifrunner.gnm1.ann1.D4REW6 Arachis hypogaea HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
arahy.Tifrunner.gnm1.ann1.JTH4ZG Arachis hypogaea HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
CAN.G219.65 Capsicum annuum HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 81.0
Ca_16404_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Ca_16412_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Migut.D02230 Erythranthe guttata HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Glyma.13G221100 Glycine max HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Glyma.15G091400 Glycine max HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Lalb_Chr15g0086671 Lupinus albus HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Nitab4.5_0000707g0150 Nicotiana tabacum HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 81.0
Nitab4.5_0004053g0030 Nicotiana tabacum HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 81.0
Phvul.006G167900 Phaseolus vulgaris HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 82.8
Potri.008G039100 Populus trichocarpa HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 81.0
Solyc01g087620.3 Solanum lycopersicum HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 81.0
Sopen01g034590 Solanum pennellii HOM05D004184 ORTHO05D004863 2.9e-17 91.7 58 81.0
Ah.02g113080 Amaranthus hybridus HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
CANSAT56G0430 Cannabis sativa HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
CANSAT56G0757 Cannabis sativa HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
CANSAT56G0833 Cannabis sativa HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
CANSAT56G3079 Cannabis sativa HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
CDE06G0371 Ceratophyllum demersum HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
CsaV3_6G036470 Cucumis sativus L. HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
QL01p021954 Quercus lobata HOM05D004184 ORTHO05D004863 3.8e-17 91.3 58 81.0
AL8G19320 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
BcaB04g20523 Brassica carinata HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
BcaC09g49169 Brassica carinata HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
A01p32830 Brassica napus HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
C01p41920 Brassica napus HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
BolC1t04148H Brassica oleracea HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
BraA01t03406Z Brassica rapa HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
Carub.0008s0690 Capsella rubella HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
ClCG01G013620 Citrullus lanatus HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
ClCG08G007540 Citrullus lanatus HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
MELO3C019800.2 Cucumis melo HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
MELO3C035361.2 Cucumis melo HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
Lsat_1_v5_gn_2_112360 Lactuca sativa HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 82.8
Sp7g08300 Schrenkiella parvula HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
Sed0000683 Sechium edule HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
Sed0011709 Sechium edule HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
Thecc.10G075300 Theobroma cacao HOM05D004184 ORTHO05D004863 4.9e-17 90.9 58 81.0
arahy.Tifrunner.gnm1.ann1.R2A6R9 Arachis hypogaea HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 81.0
Cfa011309 Carpinus fangiana HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 81.0
Cc01_g11050 Coffea canephora HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 81.0
Duzib128G1839 Durio zibethinus HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 81.0
MD03G1119300 Malus domestica HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 81.0
MD04G1097200 Malus domestica HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 79.3
MD12G1118400 Malus domestica HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 79.3
Potri.010G223100 Populus trichocarpa HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 81.0
Prupe.6G236300 Prunus persica HOM05D004184 ORTHO05D004863 6.5e-17 90.5 58 79.3
Gohir.D08G216100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 8.4e-17 90.1 58 81.0
Gorai.004G230000 Gossypium raimondii HOM05D004184 ORTHO05D004863 8.4e-17 90.1 58 81.0
Nn3g19559 Nelumbo nucifera HOM05D004184 ORTHO05D004863 8.4e-17 90.1 58 81.0
Os02g0628800 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 8.4e-17 90.1 57 82.5
Os12g0143100 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 8.4e-17 90.1 58 81.0
PSO339G1327 Papaver somniferum HOM05D004184 ORTHO05D004863 8.4e-17 90.1 56 83.9
Aa31LG9G12410 Aethionema arabicum HOM05D004184 ORTHO05D004863 1.1e-16 89.7 58 79.3
AL5G23710 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 1.1e-16 89.7 57 82.5
Manes.08G007500 Manihot esculenta HOM05D004184 ORTHO05D004863 1.1e-16 89.7 58 79.3
Manes.09G068300 Manihot esculenta HOM05D004184 ORTHO05D004863 1.1e-16 89.7 58 79.3
BcaB02g08018 Brassica carinata HOM05D004184 ORTHO05D004863 1.4e-16 89.4 58 79.3
DCAR_018804 Daucus carota HOM05D004184 ORTHO05D004863 1.4e-16 89.4 58 79.3
Thhalv10002757m.g Eutrema salsugineum HOM05D004184 ORTHO05D004863 1.9e-16 89.0 58 79.3
Os11g0145400 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 1.9e-16 89.0 58 79.3
Cpa.g.sc53.87 Carica papaya HOM05D004184 ORTHO05D004863 2.5e-16 88.6 58 79.3
Gohir.A08G198700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 2.5e-16 88.6 58 79.3
Medtr3g084140 Medicago truncatula HOM05D004184 ORTHO05D004863 2.5e-16 88.6 57 82.5
Nn2g10813 Nelumbo nucifera HOM05D004184 ORTHO05D004863 2.5e-16 88.6 58 79.3
Nn2g13109 Nelumbo nucifera HOM05D004184 ORTHO05D004863 2.5e-16 88.6 58 79.3
PGR142G3512 Punica granatum HOM05D004184 ORTHO05D004863 2.5e-16 88.6 58 79.3
Lj3g0017390 Lotus japonicus HOM05D004184 ORTHO05D004863 3.2e-16 88.2 58 79.3
Mapoly0065s0096 Marchantia polymorpha HOM05D004184 ORTHO05D004863 3.2e-16 88.2 57 80.7
MCO15G432 Micromonas commoda HOM05D004184 ORTHO05D004863 3.2e-16 88.2 57 78.9
Potri.004G211600 Populus trichocarpa HOM05D004184 ORTHO05D004863 3.2e-16 88.2 58 79.3
AagrBONN_evm.TU.Sc2ySwM_369.241 Anthoceros agrestis HOM05D004184 ORTHO05D004863 4.2e-16 87.8 58 79.3
FvH4_3g32020 Fragaria vesca HOM05D004184 ORTHO05D004863 4.2e-16 87.8 58 77.6
HanXRQChr14g0452711 Helianthus annuus HOM05D004184 ORTHO05D004863 4.2e-16 87.8 58 79.3
Sabra10G0172500 Salix brachista HOM05D004184 ORTHO05D004863 4.2e-16 87.8 58 77.6
TPR.G11596 Trifolium pratense HOM05D004184 ORTHO05D004863 4.2e-16 87.8 58 79.3
Ah.13g077000 Amaranthus hybridus HOM05D004184 ORTHO05D004863 5.5e-16 87.4 58 77.6
HPP92_005153 Vanilla planifolia HOM05D004184 ORTHO05D004863 5.5e-16 87.4 58 77.6
FAN25G3531 Fragaria x ananassa HOM05D004184 ORTHO05D004863 7.1e-16 87.0 58 77.6
MBI10_g21920_MAGBIO Magnolia biondii HOM05D004184 ORTHO05D004863 7.1e-16 87.0 43 100.0
AUR62024961 Chenopodium quinoa HOM05D004184 ORTHO05D004863 9.3e-16 86.7 57 80.7
AUR62042195 Chenopodium quinoa HOM05D004184 ORTHO05D004863 9.3e-16 86.7 57 80.7
COL.COLO4_18323 Corchorus olitorius HOM05D004184 ORTHO05D004863 9.3e-16 86.7 58 77.6
Mapoly0159s0011 Marchantia polymorpha HOM05D004184 ORTHO05D004863 9.3e-16 86.7 57 80.7
Manes.11G146400 Manihot esculenta HOM05D004184 ORTHO05D004863 1.2e-15 86.3 58 75.9
CBR_g26311 Chara braunii HOM05D004184 ORTHO05D004863 1.6e-15 85.9 57 78.9
Cre17.g725050 Chlamydomonas reinhardtii HOM05D004184 ORTHO05D004863 1.6e-15 85.9 57 78.9
Duzib170G0173 Durio zibethinus HOM05D004184 ORTHO05D004863 1.6e-15 85.9 58 75.9
Pp3c3_27450 Physcomitrium patens HOM05D004184 ORTHO05D004863 1.6e-15 85.9 57 78.9
AUR62035681 Chenopodium quinoa HOM05D004184 ORTHO05D004863 2.1e-15 85.5 57 78.9
Lsat_1_v5_gn_1_64121 Lactuca sativa HOM05D004184 ORTHO05D004863 2.1e-15 85.5 43 97.7
vmacro07069 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 2.1e-15 85.5 42 100.0
AT3G45180 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 2.7e-15 85.1 58 75.9
Thecc.09G341900 Theobroma cacao HOM05D004184 ORTHO05D004863 2.7e-15 85.1 58 75.9
Cpa.g.sc65.3 Carica papaya HOM05D004184 ORTHO05D004863 3.5e-15 84.7 58 75.9
FAN11G0673 Fragaria x ananassa HOM05D004184 ORTHO05D004863 3.5e-15 84.7 58 75.9
Sabra08G0026800 Salix brachista HOM05D004184 ORTHO05D004863 3.5e-15 84.7 43 95.3
HPP92_028504 Vanilla planifolia HOM05D004184 ORTHO05D004863 3.5e-15 84.7 58 79.3
FAN16G0267 Fragaria x ananassa HOM05D004184 ORTHO05D004863 4.6e-15 84.3 57 75.4
Peaxi162Scf00694g00018 Petunia axillaris HOM05D004184 ORTHO05D004863 4.6e-15 84.3 43 95.3
QL07p044403 Quercus lobata HOM05D004184 ORTHO05D004863 1.0e-14 83.2 58 77.6
CsaV3_1G014010 Cucumis sativus L. HOM05D004184 ORTHO05D004863 1.3e-14 82.8 72 61.1
Gohir.A10G205366 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.3e-14 82.8 43 95.3
SMO347G0051 Selaginella moellendorffii HOM05D004184 ORTHO05D004863 1.3e-14 82.8 57 75.4
SEGI_23705 Sequoiadendron giganteum HOM05D004184 ORTHO05D004863 1.8e-14 82.4 43 93.0
Cpa.g.sc3.475 Carica papaya HOM05D004184 ORTHO05D004863 3.3e-13 78.2 58 67.2
arahy.Tifrunner.gnm1.ann1.M3R4HC Arachis hypogaea HOM05D004184 ORTHO05D004863 7.4e-13 77.0 38 97.4
Sc15g0001480 Simmondsia chinensis HOM05D004184 ORTHO05D004863 5.8e-10 67.4 46 76.1
CARHR150790 Cardamine hirsuta HOM05D004184 ORTHO05D004863 5.0e-09 64.3 45 71.1
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.2e-07 59.7 45 68.9


User provided reference genes

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