Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03178 Actinidia chinensis HOM05D001366 ORTHO05D053215 4.2e-40 167.5 83 100.0
Potri.010G044100 Populus trichocarpa HOM05D001366 ORTHO05D003220 5.9e-10 67.4 64 59.4
CSS0021224 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 2.2e-09 65.5 64 59.4
CSS0046721 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 2.2e-09 65.5 64 59.4
COL.COLO4_24234 Corchorus olitorius HOM05D001366 ORTHO05D003220 2.2e-09 65.5 64 59.4
Atru.chr11.2087 Acer truncatum HOM05D001366 ORTHO05D003220 2.9e-09 65.1 52 65.4
Gohir.D01G150200 Gossypium hirsutum HOM05D001366 ORTHO05D003220 2.9e-09 65.1 64 57.8
Sabra10G0023900 Salix brachista HOM05D001366 ORTHO05D003220 2.9e-09 65.1 64 57.8
Thecc.02G256300 Theobroma cacao HOM05D001366 ORTHO05D003220 2.9e-09 65.1 64 57.8
Aqoxy3G02840 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 3.8e-09 64.7 64 57.8
Gohir.A01G159900 Gossypium hirsutum HOM05D001366 ORTHO05D003220 3.8e-09 64.7 64 56.2
Dinv24813 Davidia involucrata HOM05D001366 ORTHO05D003220 5.0e-09 64.3 66 54.5
Gohir.A12G144400 Gossypium hirsutum HOM05D001366 ORTHO05D003220 5.0e-09 64.3 64 57.8
Sc04g0009380 Simmondsia chinensis HOM05D001366 ORTHO05D003220 5.0e-09 64.3 64 57.8
PGSC0003DMG400007677 Solanum tuberosum HOM05D001366 ORTHO05D003220 5.0e-09 64.3 64 56.2
Ah.02g130140 Amaranthus hybridus HOM05D001366 ORTHO05D003220 6.5e-09 63.9 64 57.8
Gorai.002G186200 Gossypium raimondii HOM05D001366 ORTHO05D003220 6.5e-09 63.9 64 56.2
Solyc05g005020.4 Solanum lycopersicum HOM05D001366 ORTHO05D003220 6.5e-09 63.9 64 57.8
Sopen05g001030 Solanum pennellii HOM05D001366 ORTHO05D003220 6.5e-09 63.9 64 57.8
Gorai.008G160400 Gossypium raimondii HOM05D001366 ORTHO05D003220 8.5e-09 63.5 64 57.8
Lj6C809G13 Lonicera japonica HOM05D001366 ORTHO05D003220 8.5e-09 63.5 64 57.8
MD16G1097800 Malus domestica HOM05D001366 ORTHO05D003220 8.5e-09 63.5 66 53.0
Peaxi162Scf00515g00133 Petunia axillaris HOM05D001366 ORTHO05D003220 8.5e-09 63.5 50 68.0
RcHm_v2.0_Chr4g0433251 Rosa chinensis HOM05D001366 ORTHO05D003220 8.5e-09 63.5 50 68.0
TAR622G0036 Trochodendron aralioides HOM05D001366 ORTHO05D003220 8.5e-09 63.5 64 57.8
AUR62005429 Chenopodium quinoa HOM05D001366 ORTHO05D003220 1.1e-08 63.2 64 56.2
AUR62014090 Chenopodium quinoa HOM05D001366 ORTHO05D003220 1.1e-08 63.2 64 56.2
Ciclev10030499m.g Citrus clementina HOM05D001366 ORTHO05D003220 1.1e-08 63.2 66 53.0
Duzib268G0758 Durio zibethinus HOM05D001366 ORTHO05D003220 1.1e-08 63.2 64 56.2
Gohir.A01G159950 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.1e-08 63.2 62 58.1
Nn4g22680 Nelumbo nucifera HOM05D001366 ORTHO05D003220 1.1e-08 63.2 64 56.2
THA.LOC104823655 Tarenaya hassleriana HOM05D001366 ORTHO05D003220 1.1e-08 63.2 66 53.0
MSTRG.577 Avicennia marina HOM05D001366 ORTHO05D003220 1.5e-08 62.8 64 54.7
EL10Ac6g13726 Beta vulgaris HOM05D001366 ORTHO05D003220 1.5e-08 62.8 64 56.2
PGR119G2090 Punica granatum HOM05D001366 ORTHO05D003220 1.5e-08 62.8 64 54.7
TAR374G1700 Trochodendron aralioides HOM05D001366 ORTHO05D003220 1.5e-08 62.8 64 57.8
AL1G21690 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 1.9e-08 62.4 66 53.0
A09p64660 Brassica napus HOM05D001366 ORTHO05D003220 1.9e-08 62.4 66 50.0
BraA09t41826Z Brassica rapa HOM05D001366 ORTHO05D003220 1.9e-08 62.4 66 50.0
Dinv15253 Davidia involucrata HOM05D001366 ORTHO05D003220 1.9e-08 62.4 49 67.3
FvH4_4g25800 Fragaria vesca HOM05D001366 ORTHO05D003220 1.9e-08 62.4 50 66.0
FAN12G2701 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.9e-08 62.4 50 66.0
FAN12G3618 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.9e-08 62.4 50 66.0
Gohir.D12G149000 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.9e-08 62.4 63 58.7
Nitab4.5_0007943g0010 Nicotiana tabacum HOM05D001366 ORTHO05D003220 1.9e-08 62.4 59 62.7
Rhsim12G0113000 Rhododendron simsii HOM05D001366 ORTHO05D003220 1.9e-08 62.4 50 66.0
TPR.G23137 Trifolium pratense HOM05D001366 ORTHO05D003220 1.9e-08 62.4 64 54.7
TWI18G0188 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 1.9e-08 62.4 64 56.2
unitig_26.g10358 Utricularia gibba HOM05D001366 ORTHO05D003220 1.9e-08 62.4 64 54.7
Actinidia15071 Actinidia chinensis HOM05D001366 ORTHO05D003220 2.5e-08 62.0 50 64.0
MELO3C011972.2 Cucumis melo HOM05D001366 ORTHO05D003220 2.5e-08 62.0 64 56.2
CsaV3_5G031320 Cucumis sativus L. HOM05D001366 ORTHO05D003220 2.5e-08 62.0 64 56.2
Eucgr.H02531 Eucalyptus grandis HOM05D001366 ORTHO05D003220 2.5e-08 62.0 66 53.0
Manes.13G026800 Manihot esculenta HOM05D001366 ORTHO05D003220 2.5e-08 62.0 64 56.2
Potri.008G188150 Populus trichocarpa HOM05D001366 ORTHO05D003220 2.5e-08 62.0 64 56.2
Sabra08G0142500 Salix brachista HOM05D001366 ORTHO05D003220 2.5e-08 62.0 64 53.1
Sed0024840 Sechium edule HOM05D001366 ORTHO05D003220 2.5e-08 62.0 64 56.2
MSTRG.7915 Avicennia marina HOM05D001366 ORTHO05D003220 3.2e-08 61.6 52 61.5
BcaB08g37373 Brassica carinata HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 51.6
C08p48530 Brassica napus HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 51.6
BolC8t52392H Brassica oleracea HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 51.6
CAN.G447.9 Capsicum annuum HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 56.2
ClCG05G025580 Citrullus lanatus HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 54.7
Migut.L01476 Erythranthe guttata HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 54.7
FAN17G2901 Fragaria x ananassa HOM05D001366 ORTHO05D003220 3.2e-08 61.6 50 66.0
Hma1.2p1_0223F.1_g094185 Hydrangea macrophylla HOM05D001366 ORTHO05D003220 3.2e-08 61.6 50 66.0
Hund25378 Selenicereus undatus HOM05D001366 ORTHO05D003220 3.2e-08 61.6 63 54.0
vmacro16213 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 56.2
Zm00001eb278140 Zea mays HOM05D001366 ORTHO05D003220 3.2e-08 61.6 64 56.2
Aa31LG1G4070 Aethionema arabicum HOM05D001366 ORTHO05D003220 4.2e-08 61.2 66 50.0
DCAR_007066 Daucus carota HOM05D001366 ORTHO05D003220 4.2e-08 61.2 64 50.0
Nitab4.5_0002255g0040 Nicotiana tabacum HOM05D001366 ORTHO05D003220 4.2e-08 61.2 59 61.0
SalBow2G1604 Salvia bowleyana HOM05D001366 ORTHO05D003220 4.2e-08 61.2 64 53.1
Hund06013 Selenicereus undatus HOM05D001366 ORTHO05D003220 4.2e-08 61.2 64 54.7
AT1G10760 Arabidopsis thaliana HOM05D001366 ORTHO05D003220 5.5e-08 60.8 64 53.1
BcaC07g38588 Brassica carinata HOM05D001366 ORTHO05D003220 5.5e-08 60.8 63 54.0
C08p13950 Brassica napus HOM05D001366 ORTHO05D003220 5.5e-08 60.8 63 54.0
BolC8t49029H Brassica oleracea HOM05D001366 ORTHO05D003220 5.5e-08 60.8 63 54.0
Cpa.g.sc69.90 Carica papaya HOM05D001366 ORTHO05D003220 5.5e-08 60.8 64 51.6
Cfa009191 Carpinus fangiana HOM05D001366 ORTHO05D003220 5.5e-08 60.8 64 53.1
Haze_12225 Corylus avellana HOM05D001366 ORTHO05D003220 5.5e-08 60.8 64 53.1
FAN22G0388 Fragaria x ananassa HOM05D001366 ORTHO05D003220 5.5e-08 60.8 50 64.0
Medtr8g069760 Medicago truncatula HOM05D001366 ORTHO05D003220 5.5e-08 60.8 64 53.1
SGA_v2.0_scaffold228G43260 Striga asiatica HOM05D001366 ORTHO05D003220 5.5e-08 60.8 64 54.7
Thhalv10006565m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 7.2e-08 60.5 64 51.6
Oeu038612.1 Olea europaea HOM05D001366 ORTHO05D003220 7.2e-08 60.5 52 61.5
Prupe.1G248900 Prunus persica HOM05D001366 ORTHO05D003220 7.2e-08 60.5 50 62.0
QL03p058693 Quercus lobata HOM05D001366 ORTHO05D003220 7.2e-08 60.5 50 62.0
Ah.03g133220 Amaranthus hybridus HOM05D001366 ORTHO05D003220 9.4e-08 60.1 66 54.5
Carub.0001s1031 Capsella rubella HOM05D001366 ORTHO05D003220 9.4e-08 60.1 50 62.0
Sp1g09460 Schrenkiella parvula HOM05D001366 ORTHO05D003220 9.4e-08 60.1 59 57.6
A08p33790 Brassica napus HOM05D001366 ORTHO05D003220 1.2e-07 59.7 63 52.4
BraA08t35295Z Brassica rapa HOM05D001366 ORTHO05D003220 1.2e-07 59.7 63 52.4
FAN07G2766 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.2e-07 59.7 50 64.0
Glyma.08G283700 Glycine max HOM05D001366 ORTHO05D003220 1.2e-07 59.7 64 54.7
Lsat_1_v5_gn_4_4920 Lactuca sativa HOM05D001366 ORTHO05D003220 1.2e-07 59.7 66 50.0
Lj4g0012667 Lotus japonicus HOM05D001366 ORTHO05D003220 1.2e-07 59.7 64 53.1
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 1.2e-07 59.7 64 53.1
Phvul.003G062900 Phaseolus vulgaris HOM05D001366 ORTHO05D003220 1.2e-07 59.7 64 53.1
ATR1152G017 Amborella trichopoda HOM05D001366 ORTHO05D003220 1.6e-07 59.3 50 64.0
Ca_22500_v3 Cicer arietinum L. HOM05D001366 ORTHO05D003220 1.6e-07 59.3 50 60.0
HanXRQChr12g0371851 Helianthus annuus HOM05D001366 ORTHO05D003220 1.6e-07 59.3 63 54.0
PSO832G0819 Papaver somniferum HOM05D001366 ORTHO05D003220 1.6e-07 59.3 52 59.6
CANSAT01G0055 Cannabis sativa HOM05D001366 ORTHO05D003220 2.1e-07 58.9 64 51.6
DCAR_031129 Daucus carota HOM05D001366 ORTHO05D003220 2.1e-07 58.9 64 51.6
Glyma.18G142500 Glycine max HOM05D001366 ORTHO05D003220 2.1e-07 58.9 64 53.1
GSVIVG01013806001 Vitis vinifera HOM05D001366 ORTHO05D003220 2.1e-07 58.9 50 62.0
arahy.Tifrunner.gnm1.ann1.52KDTF Arachis hypogaea HOM05D001366 ORTHO05D003220 2.7e-07 58.5 64 50.0
arahy.Tifrunner.gnm1.ann1.N2L19B Arachis hypogaea HOM05D001366 ORTHO05D003220 2.7e-07 58.5 64 50.0
CARHR010980 Cardamine hirsuta HOM05D001366 ORTHO05D003220 2.7e-07 58.5 64 50.0
ECA234G4650 Erigeron canadensis HOM05D001366 ORTHO05D003220 2.7e-07 58.5 52 59.6
Mapoly0038s0029 Marchantia polymorpha HOM05D001366 ORTHO05D003220 2.7e-07 58.5 50 58.0
TWI75G1447 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 2.7e-07 58.5 64 53.1
BcaC07g38627 Brassica carinata HOM05D001366 ORTHO05D003220 3.6e-07 58.2 58 56.9
ECA233G2601 Erigeron canadensis HOM05D001366 ORTHO05D003220 3.6e-07 58.2 63 52.4
Cc11_g15490 Coffea canephora HOM05D001366 ORTHO05D003220 4.7e-07 57.8 64 53.1
MBI16_g14597_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 4.7e-07 57.8 50 62.0
MD13G1096800 Malus domestica HOM05D001366 ORTHO05D003220 4.7e-07 57.8 31 83.9
PSO063G5092 Papaver somniferum HOM05D001366 ORTHO05D003220 6.1e-07 57.4 52 57.7
Psat4g114240 Pisum sativum HOM05D001366 ORTHO05D003220 6.1e-07 57.4 64 51.6
Sed0006405 Sechium edule HOM05D001366 ORTHO05D003220 6.1e-07 57.4 63 50.8
SMO347G0598 Selaginella moellendorffii HOM05D001366 ORTHO05D003220 6.1e-07 57.4 50 58.0
SEGI_12281 Sequoiadendron giganteum HOM05D001366 ORTHO05D003220 6.1e-07 57.4 50 58.0
ATR0767G073 Amborella trichopoda HOM05D001366 ORTHO05D003220 8.0e-07 57.0 50 58.0
vmacro01143 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 8.0e-07 57.0 64 48.4
CiPaw.05G184800 Carya illinoinensis HOM05D001366 ORTHO05D003220 1.0e-06 56.6 50 58.0
Lsat_1_v5_gn_8_153980 Lactuca sativa HOM05D001366 ORTHO05D003220 1.0e-06 56.6 49 61.2
HPP92_003084 Vanilla planifolia HOM05D001366 ORTHO05D003220 1.0e-06 56.6 64 48.4
HanXRQChr12g0384161 Helianthus annuus HOM05D001366 ORTHO05D003220 1.4e-06 56.2 50 60.0
Pp3c8_6520 Physcomitrium patens HOM05D001366 ORTHO05D003220 2.3e-06 55.5 49 57.1
Pp3c8_6536 Physcomitrium patens HOM05D001366 ORTHO05D003220 2.3e-06 55.5 49 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4529 Anthoceros agrestis HOM05D001366 ORTHO05D003220 4.0e-06 54.7 49 57.1
Os06g0498400 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D003220 4.0e-06 54.7 50 58.0
Rhsim12G0042000 Rhododendron simsii HOM05D001366 ORTHO05D003220 5.2e-06 54.3 64 45.3
CDE04G3375 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 6.8e-06 53.9 50 54.0
CDE06G0295 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 6.8e-06 53.9 64 48.4
AagrBONN_evm.TU.Sc2ySwM_340.2092 Anthoceros agrestis HOM05D001366 ORTHO05D003220 8.8e-06 53.5 63 50.8
AagrBONN_evm.TU.Sc2ySwM_340.2093 Anthoceros agrestis HOM05D001366 ORTHO05D003220 8.8e-06 53.5 63 50.8
Aqoxy6G00668_Aqoxy6G00669 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 8.8e-06 53.5 64 45.3
CDE04G3560 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 8.8e-06 53.5 66 45.5
Lalb_Chr09g0334871 Lupinus albus HOM05D001366 ORTHO05D003220 8.8e-06 53.5 63 52.4


User provided reference genes

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