Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.0e-154 548.5 282 100.0
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.6e-139 499.6 282 88.7
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 7.9e-139 497.3 280 88.9
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 5.6e-137 491.1 282 87.2
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 3.1e-135 485.3 282 86.9
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 2.9e-133 478.8 282 84.0
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.1e-132 476.9 284 85.2
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 1.4e-132 476.5 282 84.4
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.9e-132 476.1 282 84.0
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 9.3e-132 473.8 269 87.4
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 9.3e-132 473.8 282 83.7
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 9.3e-132 473.8 282 83.7
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 4.6e-131 471.5 282 81.9
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 6.0e-131 471.1 282 81.6
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 7.9e-131 470.7 282 81.6
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 7.9e-131 470.7 282 81.9
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.0e-130 470.3 280 82.1
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.0e-130 470.3 282 81.2
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.0e-130 470.3 282 82.6
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.8e-130 469.5 282 81.9
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 6.7e-130 467.6 282 80.5
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 6.7e-130 467.6 282 80.9
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.7e-130 467.2 282 81.2
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 8.7e-130 467.2 282 81.2
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.9e-129 466.1 282 81.6
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.9e-129 466.1 282 81.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.9e-129 466.1 282 80.1
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.3e-129 465.3 282 80.5
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 4.3e-129 464.9 282 81.9
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 5.7e-129 464.5 282 81.2
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 7.4e-129 464.2 282 80.1
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.6e-128 463.0 282 80.1
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.6e-128 463.0 282 79.8
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.1e-128 462.6 282 81.6
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 2.1e-128 462.6 282 79.8
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 2.1e-128 462.6 281 79.7
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 6.2e-128 461.1 281 80.1
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 2.4e-127 459.1 282 78.4
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 6.9e-127 457.6 282 78.4
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.5e-126 456.4 282 78.4
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.5e-126 456.4 316 75.3
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 3.4e-126 455.3 282 78.0
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.4e-126 455.3 282 80.9
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.3e-125 453.4 282 77.7
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.7e-125 453.0 282 79.8
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.8e-125 451.8 266 85.7
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 5.0e-125 451.4 282 77.7
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 6.5e-125 451.1 282 79.1
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.1e-124 450.3 286 79.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 1.9e-124 449.5 282 79.1
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.9e-124 449.5 266 82.3
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 2.5e-124 449.1 282 78.7
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 2.5e-124 449.1 282 78.4
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 2.5e-124 449.1 290 78.6
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 3.2e-124 448.7 282 78.4
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 4.2e-124 448.4 282 77.0
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.5e-124 448.0 288 79.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.6e-123 446.4 282 75.9
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 2.1e-123 446.0 282 77.3
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.1e-123 446.0 282 77.7
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.7e-123 445.7 277 78.3
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 3.5e-123 445.3 293 74.7
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 3.5e-123 445.3 282 76.2
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.5e-123 445.3 282 76.2
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 3.5e-123 445.3 282 77.3
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.6e-123 444.9 282 76.6
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 4.6e-123 444.9 282 77.0
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 5.1e-122 441.4 282 76.6
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.1e-121 440.3 282 77.7
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.1e-121 440.3 282 78.7
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.5e-121 439.9 282 77.0
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 3.3e-121 438.7 282 77.0
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.3e-121 438.3 278 77.7
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.6e-120 436.4 282 76.2
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 3.7e-120 435.3 266 80.1
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 4.8e-120 434.9 341 66.6
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.4e-119 433.3 283 77.7
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.8e-119 433.0 283 75.6
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 3.1e-119 432.2 282 77.3
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 3.1e-119 432.2 267 80.9
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.3e-119 431.4 279 78.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 4.5e-118 428.3 283 74.9
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 7.7e-118 427.6 281 74.7
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.0e-117 427.2 285 76.8
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 2.9e-117 425.6 283 73.9
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.8e-117 425.2 283 73.9
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 8.5e-117 424.1 282 74.1
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 8.5e-117 424.1 283 73.9
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 2.5e-116 422.5 313 70.3
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 3.2e-116 422.2 266 77.8
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 5.5e-116 421.4 283 74.2
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 72.7
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 72.4
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 3.6e-115 418.7 286 73.8
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.0e-114 417.2 286 73.1
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.0e-114 417.2 286 73.4
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.8e-114 416.4 283 72.4
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.0e-114 415.6 283 72.8
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 3.9e-114 415.2 286 72.7
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 5.1e-114 414.8 282 74.8
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.3e-112 410.2 286 72.7
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.3e-112 410.2 266 77.1
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.7e-112 409.8 282 72.7
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.2e-112 409.5 286 72.7
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 2.2e-112 409.5 282 74.8
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 2.8e-112 409.1 286 72.4
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.8e-112 409.1 286 72.4
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.7e-112 408.7 286 71.3
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 4.8e-112 408.3 286 72.4
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.3e-112 407.9 282 74.1
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 8.2e-112 407.5 281 72.6
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.8e-111 406.4 286 72.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 4.1e-111 405.2 295 70.5
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 5.3e-111 404.8 325 64.3
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.2e-110 403.7 283 73.9
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.6e-110 402.5 286 69.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.3e-109 400.2 272 73.5
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.3e-109 400.2 282 69.5
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.3e-109 400.2 282 69.5
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 8.5e-109 397.5 276 72.5
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.2e-108 395.2 281 68.7
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 7.2e-108 394.4 282 71.6
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.2e-107 393.7 247 77.3
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 2.1e-107 392.9 240 78.3
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 4.7e-107 391.7 231 84.0
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 4.4e-105 385.2 282 70.6
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 4.4e-105 385.2 282 70.6
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 7.4e-105 384.4 285 68.4
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.7e-104 383.3 272 71.3
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.8e-104 382.5 306 66.0
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.7e-104 382.1 258 79.5
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 6.3e-104 381.3 283 71.0
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.5e-100 370.2 250 72.8
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.9e-100 369.8 276 70.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 5.5e-100 368.2 282 69.1
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.8e-98 363.2 283 63.3
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.0e-98 362.1 266 68.0
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 3.7e-96 355.5 213 79.3
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 3.7e-96 355.5 213 81.7
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.8e-95 353.2 279 64.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 5.3e-95 351.7 341 58.7
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-91 340.1 223 73.1
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 9.1e-87 324.3 267 61.4
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.7e-85 320.1 249 67.9
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 6.3e-80 301.6 239 64.9
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 2.7e-78 296.2 281 57.7
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 2.3e-77 293.1 284 54.9
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.2e-70 270.8 213 60.6
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.3e-53 214.2 174 60.3
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.3e-53 213.4 280 48.9
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 6.6e-53 211.8 174 58.0
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.5e-52 210.7 209 61.7
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 4.7e-51 205.7 175 62.3
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 6.2e-51 205.3 122 76.2
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.0e-50 202.6 329 42.9
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.5e-44 184.1 269 43.5
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.3e-44 183.0 122 70.5
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.4e-39 165.6 182 51.6
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.1e-28 131.3 85 68.2
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.4e-28 128.6 281 37.7
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 2.8e-27 126.7 277 37.2
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.6e-25 120.2 121 48.8
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.7e-24 117.5 217 34.1
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.3e-21 107.8 66 81.8
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.1e-21 105.9 164 43.3
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.7e-21 105.5 94 53.2
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.6e-20 102.4 118 47.5
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-14 84.7 74 64.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.3e-12 76.6 47 78.7
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 8.4e-08 62.0 49 59.2


User provided reference genes

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