Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.4e-104 382.9 183 100.0
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 2.8e-97 358.6 182 93.4
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 5.7e-90 334.3 180 85.0
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 8.6e-86 320.5 181 81.8
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.1e-85 320.1 179 84.9
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 2.5e-85 318.9 183 81.4
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 9.5e-85 317.0 181 84.0
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 1.2e-84 316.6 179 80.4
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 8.0e-84 313.9 179 79.3
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 8.0e-84 313.9 177 79.7
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 1.4e-83 313.2 180 80.0
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 3.0e-83 312.0 177 80.2
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 4.0e-83 311.6 182 80.8
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 6.8e-83 310.8 178 79.8
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 1.5e-82 309.7 183 79.2
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 3.4e-82 308.5 176 81.2
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 3.4e-82 308.5 179 79.3
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 5.7e-82 307.8 184 78.3
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 7.5e-82 307.4 182 79.7
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 9.8e-82 307.0 179 79.3
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 1.7e-81 306.2 183 78.1
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 2.2e-81 305.8 180 78.9
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 1.1e-80 303.5 182 78.0
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 1.4e-80 303.1 180 78.9
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.8e-80 302.8 180 78.3
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 1.8e-80 302.8 180 78.3
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 2.4e-80 302.4 182 76.9
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 3.1e-80 302.0 181 76.8
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 3.1e-80 302.0 183 74.9
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 5.4e-80 301.2 177 77.4
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 7.0e-80 300.8 177 76.8
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 7.0e-80 300.8 182 75.3
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 9.2e-80 300.4 180 76.7
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 9.2e-80 300.4 180 77.8
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 9.2e-80 300.4 197 72.1
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 1.2e-79 300.1 178 76.4
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 1.2e-79 300.1 176 77.8
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 1.6e-79 299.7 178 78.7
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 1.6e-79 299.7 183 77.6
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 2.0e-79 299.3 180 76.1
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 2.7e-79 298.9 180 77.8
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 3.5e-79 298.5 178 76.4
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 4.5e-79 298.1 182 76.4
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 4.5e-79 298.1 174 78.7
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 5.9e-79 297.7 182 75.8
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 7.8e-79 297.4 177 75.1
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 1.7e-78 296.2 182 75.8
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.8e-78 295.0 182 76.4
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 8.6e-78 293.9 183 72.1
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 8.6e-78 293.9 181 74.0
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 8.6e-78 293.9 179 75.4
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 1.1e-77 293.5 183 72.1
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.1e-77 293.5 204 70.6
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 1.9e-77 292.7 182 75.3
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.9e-77 292.7 182 75.3
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 2.5e-77 292.4 180 75.6
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 7.3e-77 290.8 177 77.4
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 7.3e-77 290.8 183 74.9
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 9.5e-77 290.4 183 71.6
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 9.5e-77 290.4 183 71.6
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 9.5e-77 290.4 183 71.6
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 9.5e-77 290.4 179 72.6
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 9.5e-77 290.4 182 73.1
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 1.2e-76 290.0 183 71.6
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 1.6e-76 289.7 183 71.0
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 2.1e-76 289.3 180 76.1
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 2.8e-76 288.9 183 71.6
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 2.8e-76 288.9 183 71.0
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 2.8e-76 288.9 183 71.0
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 1.4e-75 286.6 181 72.4
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 4.0e-75 285.0 179 74.3
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 4.0e-75 285.0 177 75.1
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 5.2e-75 284.6 179 73.7
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 5.2e-75 284.6 183 69.9
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 8.9e-75 283.9 180 73.3
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 1.5e-74 283.1 179 76.0
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 2.9e-73 278.9 179 76.0
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 3.7e-73 278.5 178 71.3
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 4.9e-73 278.1 176 74.4
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 1.4e-72 276.6 180 68.9
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 2.0e-71 272.7 182 68.1
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 6.6e-70 267.7 172 70.9
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 1.9e-69 266.2 178 69.1
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 1.8e-67 259.6 146 86.3
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 4.0e-67 258.5 240 54.6
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 6.8e-67 257.7 203 61.6
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 3.7e-65 251.9 167 70.7
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 8.1e-60 234.2 141 83.7
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 1.8e-59 233.0 156 71.8
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 3.1e-59 232.3 144 78.5
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 4.0e-59 231.9 130 78.5
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 4.9e-57 224.9 180 61.1
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 1.9e-56 223.0 133 75.9
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 5.4e-56 221.5 117 84.6
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 1.5e-53 213.4 179 62.6
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 1.1e-51 207.2 180 57.2
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 6.4e-49 198.0 129 73.6
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.3e-46 190.3 130 69.2
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 1.6e-44 183.3 184 52.7
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 8.1e-44 181.0 140 61.4
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 3.2e-40 169.1 89 85.4
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 9.3e-40 167.5 89 80.9
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 3.0e-38 162.5 137 59.1
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 3.0e-38 162.5 137 59.1
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 3.0e-38 162.5 137 59.1
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 3.3e-37 159.1 137 58.4
FAN13G0557 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.1e-29 134.0 97 68.0
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 2.5e-29 132.9 194 38.7
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 2.6e-26 122.9 61 90.2
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 1.3e-25 120.6 62 83.9
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 4.9e-25 118.6 176 40.3
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 4.2e-24 115.5 141 43.3
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 4.2e-24 115.5 141 43.3
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 4.2e-24 115.5 141 43.3
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 2.4e-19 99.8 130 41.5
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 5.3e-19 98.6 88 55.7
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.2e-18 97.4 99 50.5
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 2.8e-12 76.3 136 30.9
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 1.1e-11 74.3 157 33.1
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 3.6e-07 59.3 149 31.5
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 4.6e-07 58.9 149 32.2
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 4.6e-07 58.9 149 32.9
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 7.9e-07 58.2 149 32.2
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 1.0e-06 57.8 149 31.5
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 1.0e-06 57.8 135 34.8
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 1.4e-06 57.4 149 32.2
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 1.4e-06 57.4 149 32.2
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 1.4e-06 57.4 149 32.2
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 1.4e-06 57.4 150 32.7
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 1.8e-06 57.0 160 32.5
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.8e-06 57.0 149 31.5
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 2.3e-06 56.6 135 33.3
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 2.3e-06 56.6 149 31.5
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 2.3e-06 56.6 149 31.5
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 3.9e-06 55.8 149 32.2
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 5.1e-06 55.5 135 34.8
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.1e-06 55.5 135 34.8
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.1e-06 55.5 135 34.8
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 5.1e-06 55.5 135 34.1
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 6.7e-06 55.1 135 32.6
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 6.7e-06 55.1 135 34.1
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 8.8e-06 54.7 149 31.5


User provided reference genes

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