Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia01064 Actinidia chinensis HOM05D000023 ORTHO05D000014 2.5e-40 168.3 85 100.0
Oeu037628.1 Olea europaea HOM05D000023 ORTHO05D000014 1.5e-21 105.9 76 65.8
ECA233G3146 Erigeron canadensis HOM05D000023 ORTHO05D000014 4.5e-21 104.4 75 68.0
Migut.O00402 Erythranthe guttata HOM05D000023 ORTHO05D000014 1.7e-20 102.4 76 63.2
MSTRG.10183 Avicennia marina HOM05D000023 ORTHO05D000014 2.2e-20 102.1 56 83.9
Cc03_g00140 Coffea canephora HOM05D000023 ORTHO05D000014 2.9e-20 101.7 76 63.2
Oeu022707.2 Olea europaea HOM05D000023 ORTHO05D000014 3.8e-20 101.3 76 64.5
Rhsim04G0165800 Rhododendron simsii HOM05D000023 ORTHO05D000014 8.4e-20 100.1 56 82.1
GSVIVG01017686001 Vitis vinifera HOM05D000023 ORTHO05D000014 8.4e-20 100.1 84 59.5
HanXRQChr17g0565901 Helianthus annuus HOM05D000023 ORTHO05D000014 7.1e-19 97.1 55 81.8
Prupe.1G105600 Prunus persica HOM05D000023 ORTHO05D000014 9.3e-19 96.7 76 59.2
EL10Ac3g06256 Beta vulgaris HOM05D000023 ORTHO05D000014 1.6e-18 95.9 76 59.2
CANSAT80G1619 Cannabis sativa HOM05D000023 ORTHO05D000014 1.6e-18 95.9 76 56.6
Hma1.2p1_0013F.1_g007920 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.6e-18 95.9 76 60.5
AUR62029977 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.7e-18 95.1 76 61.8
MD13G1139200 Malus domestica HOM05D000023 ORTHO05D000014 2.7e-18 95.1 76 57.9
MD16G1136600 Malus domestica HOM05D000023 ORTHO05D000014 2.7e-18 95.1 56 76.8
AUR62002557 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.5e-18 94.7 76 61.8
MELO3C006750.2 Cucumis melo HOM05D000023 ORTHO05D000014 3.5e-18 94.7 58 72.4
CsaV3_3G015520 Cucumis sativus L. HOM05D000023 ORTHO05D000014 3.5e-18 94.7 58 72.4
Duzib133G0799 Durio zibethinus HOM05D000023 ORTHO05D000014 6.0e-18 94.0 55 78.2
Potri.014G114100 Populus trichocarpa HOM05D000023 ORTHO05D000014 6.0e-18 94.0 55 78.2
Thecc.04G312700 Theobroma cacao HOM05D000023 ORTHO05D000014 6.0e-18 94.0 55 78.2
Ah.13g073040 Amaranthus hybridus HOM05D000023 ORTHO05D000014 7.9e-18 93.6 56 76.8
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 7.9e-18 93.6 56 76.8
QL06p014182 Quercus lobata HOM05D000023 ORTHO05D000014 7.9e-18 93.6 76 56.6
Atru.chr5.885 Acer truncatum HOM05D000023 ORTHO05D000014 1.3e-17 92.8 55 76.4
Atru.chr5.888 Acer truncatum HOM05D000023 ORTHO05D000014 1.3e-17 92.8 55 76.4
CiPaw.01G129600 Carya illinoinensis HOM05D000023 ORTHO05D000014 1.8e-17 92.4 76 57.9
Ciclev10024195m.g Citrus clementina HOM05D000023 ORTHO05D000014 2.3e-17 92.0 55 76.4
Sed0003236 Sechium edule HOM05D000023 ORTHO05D000014 2.3e-17 92.0 55 72.7
Gohir.A12G120650 Gossypium hirsutum HOM05D000023 ORTHO05D000014 3.0e-17 91.7 84 56.0
Gohir.D12G124401 Gossypium hirsutum HOM05D000023 ORTHO05D000014 3.0e-17 91.7 84 56.0
Gorai.008G135400 Gossypium raimondii HOM05D000023 ORTHO05D000014 3.0e-17 91.7 84 56.0
Potri.002G188400 Populus trichocarpa HOM05D000023 ORTHO05D000014 3.9e-17 91.3 55 76.4
Sc25g0002160 Simmondsia chinensis HOM05D000023 ORTHO05D000014 3.9e-17 91.3 76 55.3
Aqoxy5G02793 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 6.7e-17 90.5 56 67.9
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 6.7e-17 90.5 55 74.5
THA.LOC104802620 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 8.7e-17 90.1 56 71.4
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 1.1e-16 89.7 55 74.5
PGR042G0167 Punica granatum HOM05D000023 ORTHO05D000014 1.9e-16 89.0 55 72.7
Sabra14G0084200 Salix brachista HOM05D000023 ORTHO05D000014 1.9e-16 89.0 55 72.7
Lj6g0007513 Lotus japonicus HOM05D000023 ORTHO05D000014 2.5e-16 88.6 77 55.8
Cpa.g.sc519.2 Carica papaya HOM05D000023 ORTHO05D000014 3.3e-16 88.2 55 70.9
RcHm_v2.0_Chr4g0427461 Rosa chinensis HOM05D000023 ORTHO05D000014 3.3e-16 88.2 54 74.1
FvH4_4g21491 Fragaria vesca HOM05D000023 ORTHO05D000014 4.3e-16 87.8 81 51.9
Manes.01G233700 Manihot esculenta HOM05D000023 ORTHO05D000014 4.3e-16 87.8 76 56.6
Ciclev10004312m.g Citrus clementina HOM05D000023 ORTHO05D000014 5.7e-16 87.4 54 75.9
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 5.7e-16 87.4 55 72.7
TWI09G0737 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.7e-16 87.4 55 70.9
Aa31LG8G4400 Aethionema arabicum HOM05D000023 ORTHO05D000014 7.4e-16 87.0 55 69.1
Thhalv10020031m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 7.4e-16 87.0 55 69.1
Sp3g15620 Schrenkiella parvula HOM05D000023 ORTHO05D000014 7.4e-16 87.0 55 69.1
Atru.chr4.3145 Acer truncatum HOM05D000023 ORTHO05D000014 9.7e-16 86.7 83 53.0
Psat1g017480 Pisum sativum HOM05D000023 ORTHO05D000014 9.7e-16 86.7 76 53.9
TPR.G24695 Trifolium pratense HOM05D000023 ORTHO05D000014 1.6e-15 85.9 57 68.4
VMungo1309G1890 Vigna mungo HOM05D000023 ORTHO05D000014 1.6e-15 85.9 57 68.4
AL3G30530 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 2.2e-15 85.5 55 67.3
Lalb_Chr23g0276071 Lupinus albus HOM05D000023 ORTHO05D000014 2.2e-15 85.5 77 53.2
CARHR092770 Cardamine hirsuta HOM05D000023 ORTHO05D000014 3.7e-15 84.7 55 67.3
Glyma.09G079100 Glycine max HOM05D000023 ORTHO05D000014 3.7e-15 84.7 57 66.7
AT3G17450 Arabidopsis thaliana HOM05D000023 ORTHO05D000014 4.8e-15 84.3 55 67.3
Eucgr.B02527 Eucalyptus grandis HOM05D000023 ORTHO05D000014 8.2e-15 83.6 65 63.1
Glyma.15G187500 Glycine max HOM05D000023 ORTHO05D000014 8.2e-15 83.6 57 64.9
A01p36900 Brassica napus HOM05D000023 ORTHO05D000014 1.4e-14 82.8 55 65.5
C01p46790 Brassica napus HOM05D000023 ORTHO05D000014 1.4e-14 82.8 55 65.5
BolC1t04652H Brassica oleracea HOM05D000023 ORTHO05D000014 1.4e-14 82.8 55 65.5
BraA01t03749Z Brassica rapa HOM05D000023 ORTHO05D000014 1.4e-14 82.8 55 65.5
Ca_02356_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 1.8e-14 82.4 56 66.1
PSO170G4534 Papaver somniferum HOM05D000023 ORTHO05D000014 6.5e-12 73.9 55 54.5
PSO357G0624 Papaver somniferum HOM05D000023 ORTHO05D000014 6.5e-12 73.9 55 54.5
Nitab4.5_0000098g0210 Nicotiana tabacum HOM05D000023 ORTHO05D000014 3.2e-11 71.6 69 53.6
arahy.Tifrunner.gnm1.ann1.GKHQ6E Arachis hypogaea HOM05D000023 ORTHO05D000014 6.7e-09 63.9 119 31.9
arahy.Tifrunner.gnm1.ann1.W645MI Arachis hypogaea HOM05D000023 ORTHO05D000014 6.7e-09 63.9 119 31.9
QL04p061506 Quercus lobata HOM05D000023 ORTHO05D000014 1.7e-07 59.3 72 41.7
Atru.chr12.407 Acer truncatum HOM05D000023 ORTHO05D000014 2.2e-07 58.9 72 37.5
Nn2g11190 Nelumbo nucifera HOM05D000023 ORTHO05D000014 3.7e-07 58.2 72 36.1
QL09p045098 Quercus lobata HOM05D000023 ORTHO05D000014 1.1e-06 56.6 54 44.4
Gorai.001G093000 Gossypium raimondii HOM05D000023 ORTHO05D000014 2.4e-06 55.5 72 38.9
TWI15G1062 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 3.1e-06 55.1 72 37.5
QL02p073961 Quercus lobata HOM05D000023 ORTHO05D000014 5.3e-06 54.3 55 38.2
AT3G22220 Arabidopsis thaliana HOM05D000023 ORTHO05D000014 6.9e-06 53.9 72 37.5
QL03p002046 Quercus lobata HOM05D000023 ORTHO05D000014 6.9e-06 53.9 55 38.2
QL03p002053 Quercus lobata HOM05D000023 ORTHO05D000014 6.9e-06 53.9 55 38.2
TWI14G1170 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 6.9e-06 53.9 83 34.9
TWI38G2343 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 6.9e-06 53.9 72 36.1
TWI39G0735 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 6.9e-06 53.9 52 44.2
CiPaw.01G084200 Carya illinoinensis HOM05D000023 ORTHO05D000014 9.1e-06 53.5 54 46.3
Rhsim08G0252000 Rhododendron simsii HOM05D000023 ORTHO05D000014 9.1e-06 53.5 75 36.0


User provided reference genes

Program Settings