Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 4.6e-241 837.4 402 100.0
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.1e-154 550.4 380 66.8
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 5.2e-152 541.6 374 66.6
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.5e-151 540.0 374 66.3
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.4e-151 538.5 371 67.4
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.7e-151 538.1 371 67.4
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 5.7e-151 538.1 371 66.6
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 7.5e-151 537.7 369 66.9
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 2.2e-150 536.2 375 65.1
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 2.2e-150 536.2 382 64.9
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.2e-150 536.2 375 64.0
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 2.8e-150 535.8 374 66.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 4.9e-150 535.0 383 64.5
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.9e-150 535.0 393 64.4
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.8e-149 533.1 370 65.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.8e-149 533.1 374 65.5
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.8e-149 533.1 373 64.9
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.4e-149 532.7 375 65.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 3.1e-149 532.3 374 65.0
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 4.1e-149 531.9 370 67.0
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.4e-149 531.6 380 65.8
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.4e-149 531.6 371 65.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 7.0e-149 531.2 369 65.0
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 9.2e-149 530.8 375 64.8
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 9.2e-149 530.8 368 67.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.2e-148 530.4 371 65.2
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.2e-148 530.4 374 65.5
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.0e-148 529.6 374 64.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.0e-148 529.6 374 65.0
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 2.7e-148 529.3 368 64.9
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.7e-148 529.3 368 66.8
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 3.5e-148 528.9 383 63.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 3.5e-148 528.9 376 65.2
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.9e-148 528.1 369 65.3
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 5.9e-148 528.1 373 66.2
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 7.7e-148 527.7 374 65.5
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 7.7e-148 527.7 376 64.6
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.7e-147 526.6 369 64.8
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 2.3e-147 526.2 372 64.2
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 2.3e-147 526.2 371 65.8
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 2.9e-147 525.8 382 64.4
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.9e-147 525.8 365 67.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.8e-147 525.4 374 65.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 5.0e-147 525.0 374 64.4
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 5.0e-147 525.0 368 64.4
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 5.0e-147 525.0 369 65.9
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.0e-147 525.0 371 66.0
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 6.6e-147 524.6 373 66.2
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 8.6e-147 524.2 374 64.7
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 8.6e-147 524.2 372 65.1
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.1e-146 523.9 369 65.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.5e-146 523.5 376 63.6
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.5e-146 523.5 374 65.0
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.5e-146 523.5 374 64.4
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.5e-146 523.5 372 65.1
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.9e-146 523.1 374 64.4
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.9e-146 523.1 373 64.1
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.9e-146 523.1 367 64.3
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.5e-146 522.7 370 64.3
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 2.5e-146 522.7 373 64.6
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 4.3e-146 521.9 369 64.5
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 5.6e-146 521.5 373 64.6
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 5.6e-146 521.5 375 64.5
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 9.5e-146 520.8 368 64.4
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 9.5e-146 520.8 392 63.0
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.2e-145 520.4 373 63.8
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.6e-145 520.0 368 64.7
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 8.0e-145 517.7 368 64.9
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 8.0e-145 517.7 367 63.8
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 8.0e-145 517.7 376 63.3
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 8.0e-145 517.7 374 62.8
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.0e-144 517.3 369 64.0
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.0e-144 517.3 368 64.4
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.8e-144 516.5 375 65.3
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.8e-144 516.5 377 63.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 2.3e-144 516.2 372 64.5
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.0e-144 515.4 375 64.5
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 8.9e-144 514.2 380 62.9
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.2e-143 513.8 369 65.0
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.2e-143 513.8 372 63.4
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.2e-143 513.8 374 62.0
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 4.4e-143 511.9 398 59.5
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.4e-143 511.9 372 62.4
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 4.4e-143 511.9 372 63.7
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 7.5e-143 511.1 368 63.9
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 7.5e-143 511.1 373 63.5
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.3e-142 510.4 373 61.4
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.7e-142 510.0 377 62.9
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 4.9e-142 508.4 374 63.4
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 6.4e-142 508.1 372 62.6
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.1e-141 507.3 374 61.5
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 3.2e-141 505.8 383 62.7
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 5.4e-141 505.0 374 61.8
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 7.0e-141 504.6 373 61.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 7.0e-141 504.6 372 62.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.0e-139 500.7 373 61.7
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.0e-139 500.7 385 60.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 3.9e-139 498.8 358 63.4
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 5.0e-139 498.4 373 61.1
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 3.3e-138 495.7 368 61.7
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 9.5e-138 494.2 375 62.7
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.6e-137 493.4 369 61.8
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.6e-137 493.4 420 56.9
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 3.6e-137 492.3 375 61.1
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 8.0e-137 491.1 349 65.3
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 2.6e-135 486.1 405 56.0
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.1e-133 480.7 376 60.4
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-133 480.7 364 61.5
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.9e-133 479.9 378 61.4
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.5e-132 475.7 457 52.3
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.9e-130 469.9 385 59.7
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.6e-129 465.7 320 65.9
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.3e-126 457.2 419 54.4
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.7e-126 456.8 373 58.4
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 4.9e-126 455.3 368 57.9
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 7.1e-125 451.4 407 54.8
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.6e-124 450.3 374 58.3
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.9e-118 429.5 292 66.1
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 9.6e-114 414.5 309 62.8
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.4e-102 374.8 382 51.8
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 4.2e-101 372.5 275 62.9
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 3.3e-90 336.3 385 46.2
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 8.1e-89 331.6 384 46.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 3.9e-83 312.8 383 44.1
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.5e-82 310.1 220 65.9
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 2.6e-79 300.1 396 41.9
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.6e-76 290.8 346 44.8
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-74 284.3 251 56.2
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.8e-73 280.0 221 61.1
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.2e-73 278.5 223 59.6
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 6.7e-67 258.8 374 39.6
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 9.7e-66 255.0 164 68.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-65 254.6 194 62.4
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 5.9e-63 245.7 166 66.3
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.7e-46 191.0 172 55.8
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 8.0e-44 182.2 475 29.1
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.0e-35 155.2 91 71.4
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.8e-32 144.4 105 61.9
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 5.4e-32 142.9 103 63.1
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 1.0e-22 112.1 65 72.3
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-22 111.7 135 46.7
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 5.6e-21 106.3 340 27.1
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.2e-15 88.6 94 50.0
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.3e-11 74.3 44 72.7
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 9.9e-10 68.9 69 49.3
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.7e-09 68.2 46 65.2
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 2.1e-07 61.2 30 73.3
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.7e-06 58.2 45 60.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.7e-06 58.2 45 60.0


User provided reference genes

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