Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 1.3e-70 269.6 138 100.0
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.8e-48 196.1 119 82.4
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 9.1e-48 193.7 117 82.1
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.9e-47 191.0 112 83.9
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.9e-46 188.7 115 80.9
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.0e-43 180.3 138 68.8
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 2.3e-43 179.1 125 71.2
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.0e-43 178.7 138 68.1
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 4.0e-43 178.3 104 80.8
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 4.0e-43 178.3 134 67.9
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 5.2e-43 177.9 104 79.8
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 5.2e-43 177.9 104 79.8
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 5.2e-43 177.9 124 71.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 5.2e-43 177.9 124 71.0
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 5.2e-43 177.9 109 77.1
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 8.8e-43 177.2 103 81.6
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.8e-43 177.2 103 81.6
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.8e-43 177.2 103 81.6
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 8.8e-43 177.2 103 81.6
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 8.8e-43 177.2 104 79.8
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.2e-42 176.8 111 74.8
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 1.2e-42 176.8 107 77.6
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.5e-42 176.4 103 80.6
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.5e-42 176.4 124 71.8
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.5e-42 176.4 104 79.8
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.5e-42 176.4 124 72.6
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.0e-42 176.0 126 70.6
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 2.0e-42 176.0 104 79.8
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 2.0e-42 176.0 112 75.9
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 2.0e-42 176.0 110 77.3
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.6e-42 175.6 109 76.1
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 2.6e-42 175.6 125 69.6
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 2.6e-42 175.6 125 69.6
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 2.6e-42 175.6 111 73.9
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.6e-42 175.6 103 81.6
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.4e-42 175.3 136 66.2
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 3.4e-42 175.3 115 72.2
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.4e-42 175.3 124 71.8
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 3.4e-42 175.3 107 78.5
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 4.4e-42 174.9 133 68.4
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 4.4e-42 174.9 128 69.5
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 4.4e-42 174.9 104 78.8
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 4.4e-42 174.9 125 69.6
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 4.4e-42 174.9 124 70.2
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 5.7e-42 174.5 119 73.1
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.7e-42 174.5 109 76.1
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.7e-42 174.5 109 76.1
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 5.7e-42 174.5 129 66.7
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.7e-42 174.5 104 78.8
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.7e-42 174.5 104 78.8
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.7e-42 174.5 104 78.8
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.7e-42 174.5 104 78.8
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 5.7e-42 174.5 104 78.8
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 5.7e-42 174.5 107 77.6
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.7e-42 174.5 107 77.6
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.7e-42 174.5 107 77.6
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 5.7e-42 174.5 107 77.6
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 5.7e-42 174.5 123 69.1
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 5.7e-42 174.5 132 68.2
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 5.7e-42 174.5 125 70.4
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 7.5e-42 174.1 104 78.8
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 7.5e-42 174.1 129 68.2
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 7.5e-42 174.1 124 71.0
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 7.5e-42 174.1 103 79.6
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 7.5e-42 174.1 125 69.6
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 7.5e-42 174.1 104 78.8
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 7.5e-42 174.1 124 71.8
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 7.5e-42 174.1 119 72.3
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 7.5e-42 174.1 124 69.4
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 9.8e-42 173.7 124 70.2
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 9.8e-42 173.7 107 76.6
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 9.8e-42 173.7 104 78.8
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.8e-42 173.7 107 77.6
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 9.8e-42 173.7 109 75.2
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 1.3e-41 173.3 123 68.3
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.7e-41 172.9 104 78.8
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 1.7e-41 172.9 119 72.3
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 2.2e-41 172.6 103 78.6
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.2e-41 172.6 134 67.9
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.8e-41 172.2 121 71.1
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 2.8e-41 172.2 104 78.8
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 2.8e-41 172.2 104 78.8
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 2.8e-41 172.2 104 78.8
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.7e-41 171.8 122 70.5
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.7e-41 171.8 132 67.4
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 3.7e-41 171.8 109 75.2
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 3.7e-41 171.8 109 75.2
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.7e-41 171.8 104 79.8
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 4.8e-41 171.4 130 66.9
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 6.3e-41 171.0 104 76.0
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.3e-41 171.0 132 67.4
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 6.3e-41 171.0 104 77.9
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.3e-41 171.0 109 74.3
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 8.3e-41 170.6 101 78.2
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 8.3e-41 170.6 111 76.6
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.4e-40 169.9 103 77.7
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.4e-40 169.9 131 67.9
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 3.1e-40 168.7 104 76.9
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 4.1e-40 168.3 104 76.9
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 4.1e-40 168.3 124 69.4
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 4.1e-40 168.3 124 69.4
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 5.4e-40 167.9 107 74.8
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 5.4e-40 167.9 128 66.4
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 5.4e-40 167.9 131 67.2
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 7.0e-40 167.5 124 69.4
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 7.0e-40 167.5 129 65.1
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 9.1e-40 167.2 119 68.1
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.2e-39 166.8 104 74.0
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.2e-39 166.8 124 68.5
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.2e-39 166.8 124 68.5
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.6e-39 166.4 124 68.5
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 1.6e-39 166.4 124 68.5
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.6e-39 166.4 124 67.7
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 3.5e-39 165.2 139 63.3
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.5e-39 165.2 118 71.2
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 7.7e-39 164.1 124 68.5
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-38 163.3 106 71.7
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 9.4e-37 157.1 124 65.3
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 1.2e-36 156.8 100 72.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.6e-36 156.4 103 75.7
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 4.7e-36 154.8 100 70.0
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 8.0e-36 154.1 123 65.0
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 1.2e-31 140.2 104 63.5
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 2.0e-31 139.4 127 58.3
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.1e-24 117.1 137 48.2
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.3e-22 110.2 108 50.0
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 1.9e-21 106.3 84 60.7
Cre16.g660150 Chlamydomonas reinhardtii HOM05D001946 ORTHO05D002111 7.1e-08 61.2 115 33.9
PRCOL_00002469 Prasinoderma coloniale HOM05D001946 ORTHO05D002111 1.2e-07 60.5 108 32.4
MCO07G048 Micromonas commoda HOM05D001946 ORTHO05D002111 1.6e-07 60.1 103 33.0
Mapoly0158s0015 Marchantia polymorpha HOM05D001946 ORTHO05D002111 3.5e-07 58.9 122 30.3
CBR_g20003 Chara braunii HOM05D001946 ORTHO05D002111 4.6e-07 58.5 99 33.3
Mapoly0158s0031 Marchantia polymorpha HOM05D001946 ORTHO05D002111 1.7e-06 56.6 133 30.8
Aqoxy5G01460 Aquilegia oxysepala HOM05D001946 ORTHO05D002111 3.9e-06 55.5 114 30.7
Mapoly0006s0253 Marchantia polymorpha HOM05D001946 ORTHO05D002111 8.6e-06 54.3 134 31.3


User provided reference genes

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