Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 0.0e+00 2103.2 1075 100.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.1e-279 964.9 1029 51.6
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.1e-261 906.4 1074 48.0
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.6e-259 897.9 1032 48.4
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.5e-254 882.9 1035 48.2
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 6.9e-236 821.6 973 48.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.6e-211 740.7 982 42.0
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 3.4e-206 723.0 1059 40.4
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 2.8e-205 719.9 1058 40.3
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.4e-204 717.6 1055 40.0
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 5.4e-204 715.7 1045 39.7
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 5.4e-204 715.7 1035 40.8
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 3.5e-203 713.0 1060 40.1
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 4.5e-203 712.6 1048 38.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 5.9e-203 712.2 987 41.7
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 7.7e-203 711.8 1026 40.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 1.3e-202 711.1 1058 39.3
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 5.0e-202 709.1 980 41.4
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.1e-201 708.0 1026 40.8
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.5e-201 707.6 986 41.4
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 7.3e-201 705.3 1029 39.7
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.6e-200 704.1 1042 39.8
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.6e-200 704.1 1069 39.7
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 2.1e-200 703.7 1058 40.0
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 6.1e-200 702.2 1046 39.7
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 1.4e-199 701.0 1062 39.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 4.0e-199 699.5 1029 38.9
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 5.2e-199 699.1 1066 39.1
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 1.2e-198 698.0 1055 38.8
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.4e-198 696.4 1051 39.4
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 5.7e-198 695.7 1012 41.1
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 7.5e-198 695.3 1038 39.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 9.8e-198 694.9 1056 39.4
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 1.3e-197 694.5 1053 40.3
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.3e-197 694.5 1086 39.8
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.3e-197 694.5 1055 40.0
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 3.2e-196 689.9 1026 39.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 4.1e-196 689.5 1065 39.2
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.1e-196 689.5 1036 40.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.6e-195 687.6 1063 39.5
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.6e-195 687.6 1057 38.7
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 1.6e-195 687.6 1046 38.3
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.0e-195 687.2 1067 39.3
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 3.5e-195 686.4 1082 38.3
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 3.5e-195 686.4 1009 40.2
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.6e-195 686.0 1039 39.3
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.0e-194 684.9 1039 39.3
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.3e-194 684.5 1054 39.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 5.0e-194 682.6 1016 39.8
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.1e-193 681.4 1030 38.4
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 1.1e-193 681.4 1049 39.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 1.9e-193 680.6 1027 39.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 1.9e-193 680.6 1064 38.3
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 2.5e-193 680.2 1060 38.6
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 2.5e-193 680.2 1013 40.7
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 5.6e-193 679.1 1049 39.2
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 7.3e-193 678.7 1010 40.1
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 1.2e-192 677.9 1056 38.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.1e-192 677.2 1056 38.9
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 3.6e-192 676.4 1056 38.4
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 3.6e-192 676.4 1016 38.8
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 1.4e-191 674.5 1079 38.6
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 1.4e-191 674.5 1016 38.6
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.8e-191 674.1 1025 38.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 5.2e-191 672.5 1035 39.6
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 8.9e-191 671.8 1069 38.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 8.9e-191 671.8 1035 38.4
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-190 671.4 1084 38.4
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 1.5e-190 671.0 1028 38.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 4.4e-190 669.5 919 41.3
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 4.4e-190 669.5 911 42.2
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 4.4e-190 669.5 961 40.1
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.3e-189 667.9 1050 38.2
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 4.9e-189 666.0 1041 38.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.4e-189 665.6 978 40.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 6.4e-189 665.6 1120 37.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-188 664.8 1067 38.2
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-188 664.8 1045 38.1
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 1.4e-188 664.5 1047 38.3
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 2.4e-188 663.7 1040 38.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 4.1e-188 662.9 1062 37.5
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.2e-187 661.4 1044 37.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 1.2e-187 661.4 1009 39.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-187 660.6 1046 38.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 2.7e-187 660.2 1045 38.1
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 4.6e-187 659.4 1009 38.7
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 3.3e-185 653.3 1045 38.0
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 5.6e-185 652.5 1056 37.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.2e-184 651.4 1057 36.9
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 2.1e-184 650.6 1050 37.7
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 4.7e-184 649.4 1041 37.8
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 3.1e-183 646.7 1050 37.3
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 8.9e-183 645.2 1056 36.8
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 4.9e-181 639.4 1011 38.0
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 2.6e-174 617.1 963 37.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.5e-169 601.3 1056 36.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 2.4e-167 594.0 947 37.6
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 4.3e-161 573.2 993 37.3
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 2.4e-159 567.4 1131 33.8
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 3.4e-158 563.5 924 37.1
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.6e-150 535.8 1018 35.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.4e-140 505.0 1269 31.1
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 1.2e-139 501.9 897 34.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.9e-137 494.6 892 36.3
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.1e-135 488.8 951 33.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.0e-134 484.6 869 35.6
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 7.9e-131 472.6 829 38.2
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.1e-123 448.0 800 36.8
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 6.1e-123 446.4 1007 33.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 7.7e-118 429.5 626 41.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.0e-106 392.5 742 34.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 3.5e-102 377.5 701 34.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.0e-98 365.9 750 32.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 5.7e-97 360.1 837 31.9
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.7e-97 360.1 532 42.1
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.8e-95 355.1 537 40.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.5e-94 350.9 992 28.9
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.0e-90 339.3 681 35.4
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.2e-90 337.0 855 31.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.3e-88 332.4 525 40.0
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 2.0e-86 325.1 517 39.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.0e-82 312.8 1174 24.2
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.5e-81 306.6 537 37.1
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.3e-69 268.5 337 40.9
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 3.0e-69 268.1 337 40.7
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 4.4e-65 254.2 658 30.4
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.3e-60 238.0 221 53.4
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 8.1e-59 233.4 372 35.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 8.9e-58 229.9 179 60.3
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.9e-56 224.9 282 41.1
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.1e-55 223.0 1101 23.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.2e-51 209.5 156 62.8
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 8.4e-48 196.8 386 33.7
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 6.4e-40 170.6 227 40.5
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 2.1e-38 165.6 286 34.3
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.6e-38 164.5 139 57.6
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.0e-37 161.8 134 58.2
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 8.7e-37 160.2 134 58.2
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 5.3e-34 151.0 129 57.4
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.8e-32 144.8 103 66.0
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 6.4e-32 144.1 193 37.8
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.4e-31 142.9 103 64.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.3e-29 135.6 315 31.1
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 3.7e-27 128.3 105 58.1
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-26 125.9 205 35.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-25 123.2 236 32.6
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.5e-23 115.5 76 67.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 4.2e-23 114.8 76 69.7
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.5e-23 114.4 250 30.8
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 5.5e-23 114.4 76 67.1
AagrBONN_evm.TU.Sc2ySwM_340.1683 Anthoceros agrestis HOM05D004020 ORTHO05D071844 1.2e-22 113.2 66 89.4
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-21 109.4 100 54.0
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 4.3e-20 104.8 420 26.2
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.6e-14 86.3 97 42.3
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.8e-10 72.8 85 38.8
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.9e-10 70.9 211 31.8
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.5e-09 69.7 93 37.6
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 5.9e-09 67.8 95 38.9
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-08 67.0 119 38.7
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.7e-08 66.2 177 32.8
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 6.5e-08 64.3 107 39.3
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.2e-07 61.6 152 27.6


User provided reference genes

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