Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1790.8 872 100.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1508.0 873 83.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1503.8 874 84.1
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1502.3 875 83.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1482.6 906 80.7
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1462.6 880 81.5
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1461.4 879 81.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1455.7 911 79.1
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1455.3 879 81.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1449.1 880 81.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1353.2 873 75.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1351.7 876 76.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1246.1 797 75.3
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 799 75.0
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1231.9 795 74.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1205.3 796 72.4
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1196.8 805 72.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1192.9 794 72.3
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 871 65.7
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 836 69.5
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1185.6 805 71.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1181.8 804 71.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1181.0 871 65.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1179.5 871 65.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1177.9 871 65.7
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 871 65.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1176.0 801 71.2
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1174.5 871 64.8
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 869 65.9
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1162.9 871 63.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1162.9 870 64.4
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 872 64.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1152.9 870 64.5
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 873 63.6
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 869 64.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 876 63.6
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 870 64.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 868 62.9
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 873 63.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1147.9 868 62.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 870 62.6
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 871 63.8
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1137.9 871 62.8
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 873 63.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 880 62.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1130.2 806 68.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1129.4 748 72.7
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1129.4 867 63.4
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 870 62.2
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 889 62.3
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1120.9 880 62.8
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 872 61.9
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1117.4 869 62.1
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1116.7 869 62.6
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 905 60.6
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1109.7 870 63.2
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1109.0 872 61.8
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 901 60.5
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1103.2 874 62.7
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1100.9 871 61.3
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1098.6 872 61.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 874 61.6
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 846 63.0
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 876 60.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 990 55.8
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 882 61.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 874 60.8
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 874 60.8
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 870 62.0
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 833 63.3
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 874 60.5
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 872 61.7
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 880 60.3
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 871 60.4
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 875 60.5
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1081.6 874 61.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1081.6 874 60.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1080.9 870 60.3
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 894 60.3
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1078.9 830 63.1
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 871 60.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 873 60.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.0e-312 1073.5 825 64.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 3.0e-311 1071.6 876 59.7
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 3.0e-311 1071.6 876 59.7
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 3.0e-311 1071.6 867 60.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 4.2e-311 1071.2 873 60.5
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 4.2e-311 1071.2 880 60.1
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.6e-310 1068.5 873 60.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 5.9e-310 1067.4 874 59.5
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 3.6e-307 1058.1 874 59.3
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 3.3e-305 1051.6 875 59.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.3e-304 1049.7 871 59.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 4.8e-304 1047.7 876 58.7
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 8.2e-304 1047.0 868 59.2
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 1.4e-303 1046.2 868 59.3
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.7e-302 1042.0 879 58.0
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 3.4e-297 1025.0 874 58.1
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.8e-296 1021.1 890 57.6
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 1.4e-295 1019.6 873 57.7
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.0e-293 1013.4 876 58.1
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.0e-293 1013.4 869 57.7
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.2e-293 1012.3 869 57.8
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.0e-290 1003.4 744 64.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.0e-289 999.2 770 61.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.3e-288 996.5 845 56.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 3.1e-287 991.9 792 59.0
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.3e-284 981.9 735 63.9
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 7.3e-284 980.7 858 57.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 8.0e-283 977.2 785 62.0
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 8.0e-283 977.2 839 55.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 2.0e-281 972.6 798 58.3
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-280 969.9 905 54.6
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.2e-278 963.4 866 55.2
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.0e-277 960.3 873 55.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.5e-273 946.4 937 52.5
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.6e-273 945.7 790 60.0
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.4e-257 891.7 486 86.2
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.7e-256 889.8 830 56.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.5e-249 866.7 877 51.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 4.3e-244 848.6 878 49.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.6e-235 820.1 837 48.9
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 7.9e-230 801.2 669 59.9
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-227 793.9 801 52.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 5.5e-223 778.5 881 45.7
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.4e-218 763.8 808 46.9
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 5.3e-210 735.3 618 58.6
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.8e-208 729.2 644 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 7.0e-194 681.8 708 48.2
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.5e-193 679.5 689 53.3
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.5e-191 674.1 679 53.2
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.4e-188 662.5 442 69.0
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.8e-179 633.3 445 65.8
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.7e-171 607.4 608 51.5
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 6.8e-165 585.5 442 63.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.2e-163 580.5 597 53.1
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.7e-161 573.5 481 58.6
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 8.0e-158 562.0 546 50.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 9.8e-156 555.1 883 37.5
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 3.1e-125 453.8 440 53.4
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.4e-117 428.3 332 59.9
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.1e-114 418.7 415 52.5
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 4.6e-113 413.3 270 71.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 3.7e-110 403.7 798 34.2
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-107 395.6 340 57.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.6e-100 370.9 412 48.3
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.2e-92 345.5 874 32.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.0e-91 342.4 429 45.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.4e-85 321.2 337 50.7
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 4.1e-85 320.5 243 61.3
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.6e-81 308.5 534 34.8
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.2e-67 261.5 202 58.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 6.1e-57 226.9 209 56.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.7e-52 211.5 166 60.8
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 5.0e-51 207.2 137 69.3
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 8.9e-48 196.4 101 83.2
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.1e-37 161.0 99 74.7
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 7.8e-36 156.8 194 44.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.3e-27 128.6 81 69.1
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 6.2e-25 120.6 98 63.3
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 8.1e-25 120.2 199 37.2
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.9e-22 111.7 70 77.1
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 3.8e-22 111.3 126 53.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.6e-20 105.9 95 58.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-20 105.1 94 59.6
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 4.8e-17 94.4 92 51.1
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.4e-16 92.8 106 48.1
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.4e-15 88.2 61 67.2
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 5.8e-15 87.4 83 55.4
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.3e-14 86.3 84 47.6
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.9e-13 82.4 45 73.3
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 3.5e-12 78.2 42 78.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.7e-11 75.9 35 91.4
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.1e-11 74.3 49 67.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.4e-08 65.5 57 52.6
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.4e-07 61.6 62 53.2


User provided reference genes

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