Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 8.6e-189 664.8 618 100.0
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.6e-100 370.9 619 62.2
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.6e-97 360.9 620 59.7
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 3.0e-93 347.4 617 58.7
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.3e-85 321.2 624 49.8
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 3.0e-85 320.9 625 54.2
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.8e-83 314.3 623 54.3
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 1.6e-81 308.5 623 58.1
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 4.7e-78 297.0 238 64.3
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 7.0e-74 283.1 624 56.7
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 2.7e-73 281.2 622 57.7
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 7.5e-68 263.1 620 56.5
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.3e-64 252.3 541 73.0
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.6e-62 244.2 630 53.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.6e-62 244.2 630 53.8
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.9e-55 221.9 626 54.2
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.6e-54 218.8 621 58.8
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-39 169.5 207 45.9
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.5e-39 169.1 212 43.9
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 2.6e-36 158.3 178 51.1
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 4.2e-34 151.0 165 47.3
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 5.4e-34 150.6 165 44.8
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 7.1e-34 150.2 556 66.0
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 5.1e-32 144.1 165 40.6
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.8e-29 135.6 192 38.0
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 5.8e-28 130.6 128 47.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.3e-27 129.4 160 42.5
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.9e-27 128.3 206 35.0
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.8e-27 127.9 160 41.2
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 4.9e-27 127.5 164 41.5
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 4.9e-27 127.5 187 35.3
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 6.4e-27 127.1 159 39.6
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 8.4e-27 126.7 166 39.8
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.6e-25 122.5 175 36.6
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 2.1e-25 122.1 172 34.9
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.1e-25 122.1 129 45.0
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 4.6e-25 120.9 421 62.5
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 5.1e-24 117.5 219 29.2
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 8.7e-24 116.7 193 35.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 8.7e-24 116.7 145 41.4
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.5e-23 115.9 160 35.6
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.9e-23 115.5 202 35.6
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 2.5e-23 115.2 122 45.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 2.5e-23 115.2 189 36.0
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 3.3e-23 114.8 166 36.7
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 7.4e-23 113.6 149 37.6
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 9.6e-23 113.2 165 31.5
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 9.6e-23 113.2 402 63.9
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 2.1e-22 112.1 156 39.1
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 2.8e-22 111.7 502 62.7
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 2.8e-22 111.7 166 36.7
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 4.8e-22 110.9 132 37.1
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 4.8e-22 110.9 167 36.5
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 6.2e-22 110.5 166 36.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.4e-21 109.4 167 36.5
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 2.4e-21 108.6 181 32.6
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 3.1e-21 108.2 120 44.2
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 5.3e-21 107.5 141 40.4
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 9.0e-21 106.7 184 34.8
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 1.2e-20 106.3 122 43.4
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 2.0e-20 105.5 129 38.0
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 2.0e-20 105.5 429 33.6
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.0e-20 105.5 142 38.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 4.5e-20 104.4 128 39.8
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 5.8e-20 104.0 210 34.3
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 5.8e-20 104.0 178 33.7
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 7.6e-20 103.6 121 44.6
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.6e-20 103.6 163 36.2
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 1.7e-19 102.4 72 68.1
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.8e-19 101.3 149 36.2
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.9e-18 99.0 122 35.2
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.7e-17 95.1 125 35.2
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.7e-17 95.1 181 30.4
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 4.6e-17 94.4 138 37.7
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 4.6e-17 94.4 138 37.7
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 6.0e-17 94.0 160 31.2
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.0e-16 93.2 242 28.1
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.3e-16 92.8 132 37.9
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 2.3e-16 92.0 154 31.8
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 3.9e-16 91.3 129 38.0
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 5.1e-16 90.9 107 41.1
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.5e-15 89.4 149 31.5
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.6e-14 85.9 130 35.4
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.1e-14 85.5 132 36.4
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.1e-14 85.5 116 34.5
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 3.7e-14 84.7 134 32.1
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 3.7e-14 84.7 129 35.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 1.1e-13 83.2 166 30.7
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 3.1e-13 81.6 122 40.2
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 3.1e-13 81.6 115 40.0
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 6.9e-13 80.5 162 30.2
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.9e-13 80.5 148 31.8
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 9.0e-13 80.1 133 33.1
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.4e-12 78.2 178 25.8
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 1.7e-11 75.9 141 30.5
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 2.9e-11 75.1 134 30.6
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 3.8e-11 74.7 134 30.6
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 8.4e-11 73.6 90 38.9
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.5e-10 72.0 180 25.0
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 5.5e-10 70.9 165 27.9
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.2e-09 69.7 177 30.5
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.6e-09 69.3 138 29.7
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 3.5e-09 68.2 71 39.4
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 4.6e-09 67.8 151 30.5
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 7.9e-09 67.0 71 39.4
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.7e-08 63.5 160 23.8
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 1.9e-07 62.4 165 28.5
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 3.3e-07 61.6 159 28.9
MBI05_g20726_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 4.3e-07 61.2 155 28.4
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 5.7e-07 60.8 71 45.1
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 5.7e-07 60.8 158 29.7
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 5.7e-07 60.8 158 29.7
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 9.7e-07 60.1 71 45.1
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 1.3e-06 59.7 161 30.4
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.3e-06 59.7 161 30.4
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 1.6e-06 59.3 70 40.0
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 1.6e-06 59.3 70 40.0
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.6e-06 59.3 217 27.2
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 3.7e-06 58.2 71 42.3
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 3.7e-06 58.2 71 42.3
MELO3C035453.2 Cucumis melo HOM05D007212 ORTHO05D009094 3.7e-06 58.2 158 28.5
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 4.8e-06 57.8 51 52.9
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 4.8e-06 57.8 165 24.8
CAN.G1030.27 Capsicum annuum HOM05D006287 ORTHO05D008192 6.3e-06 57.4 37 62.2
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 6.3e-06 57.4 72 38.9
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 8.2e-06 57.0 71 40.8
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 8.2e-06 57.0 71 40.8
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 8.2e-06 57.0 71 43.7


User provided reference genes

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