Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 1.2e-228 796.2 414 100.0
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 4.8e-153 545.0 395 75.9
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 5.9e-151 538.1 373 77.7
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 7.7e-151 537.7 395 75.9
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.0e-150 537.3 382 76.2
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.9e-150 535.8 395 75.7
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 2.9e-150 535.8 393 74.3
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.9e-149 533.1 395 73.9
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.9e-149 533.1 395 73.9
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.9e-149 533.1 393 74.0
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 3.2e-149 532.3 395 73.9
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.7e-148 528.5 393 74.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.0e-147 527.3 393 73.8
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.5e-133 480.3 341 75.4
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.5e-125 453.8 396 63.9
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 6.4e-121 438.3 346 67.6
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 1.9e-120 436.8 354 66.7
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 7.0e-120 434.9 348 65.8
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 3.0e-118 429.5 397 61.2
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 3.0e-118 429.5 396 60.1
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 5.0e-118 428.7 348 65.2
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 8.6e-118 427.9 377 60.7
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.5e-117 427.2 400 59.8
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.9e-117 426.8 364 62.6
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.5e-117 426.4 391 61.4
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 2.5e-117 426.4 369 63.1
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 4.3e-117 425.6 401 60.6
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 7.3e-117 424.9 353 63.5
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.6e-116 423.7 393 59.8
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 6.2e-116 421.8 398 58.5
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.3e-115 419.9 395 59.5
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.1e-115 419.5 395 62.0
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 5.2e-115 418.7 351 63.0
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 6.8e-115 418.3 385 59.5
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 1.2e-114 417.5 393 58.5
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.5e-114 417.2 366 60.4
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 2.0e-114 416.8 391 60.1
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 2.0e-114 416.8 389 59.9
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 2.6e-114 416.4 385 60.5
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 5.8e-114 415.2 393 58.3
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.3e-113 414.1 396 58.1
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.7e-113 413.7 367 59.9
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 2.9e-113 412.9 344 65.7
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.9e-113 412.9 351 61.5
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 4.9e-113 412.1 344 65.4
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.9e-112 410.2 408 56.6
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 2.4e-112 409.8 388 59.3
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 3.2e-112 409.5 391 59.1
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 3.2e-112 409.5 368 61.1
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 5.4e-112 408.7 408 56.4
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 1.6e-111 407.1 369 61.8
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 2.1e-111 406.8 397 58.2
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 4.6e-111 405.6 348 62.9
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 7.8e-111 404.8 395 57.7
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 7.8e-111 404.8 365 60.0
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 7.8e-111 404.8 323 65.0
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.0e-110 404.4 398 56.5
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 1.7e-110 403.7 379 60.2
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.7e-110 403.7 384 58.6
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 3.9e-110 402.5 323 63.8
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 6.6e-110 401.7 337 64.1
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 6.6e-110 401.7 345 61.2
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 1.1e-109 401.0 389 58.9
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.1e-109 401.0 401 55.6
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 1.5e-109 400.6 387 58.7
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.9e-109 400.2 356 60.1
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.9e-109 400.2 364 61.0
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.5e-109 399.8 405 57.5
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 5.6e-109 398.7 372 59.4
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.6e-108 397.1 352 58.8
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.2e-108 395.2 421 55.3
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 2.0e-106 390.2 329 62.6
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 3.2e-104 382.9 385 59.0
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 4.1e-104 382.5 340 58.5
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.5e-103 379.4 385 56.9
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 2.5e-101 373.2 301 64.1
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.6e-100 370.5 371 59.0
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 8.1e-100 368.2 361 57.9
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 2.6e-98 363.2 300 65.3
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.7e-97 360.5 381 53.0
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.9e-96 357.1 500 45.0
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 5.4e-96 355.5 314 59.2
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.1e-95 353.6 350 54.0
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 5.6e-93 345.5 581 40.6
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 4.0e-91 339.3 352 53.7
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 5.3e-91 339.0 392 51.3
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 3.2e-88 329.7 300 57.0
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 7.1e-88 328.6 428 48.8
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.2e-87 327.8 620 37.9
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 6.0e-87 325.5 273 64.5
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 3.6e-84 316.2 268 61.6
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.1e-83 314.7 272 62.5
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.5e-82 310.8 313 52.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.6e-82 310.1 267 59.9
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 2.9e-81 306.6 314 52.5
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.4e-80 304.3 322 52.5
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 5.5e-80 302.4 304 57.9
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.3e-78 297.7 322 50.9
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 3.3e-77 293.1 326 48.8
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 4.3e-77 292.7 294 56.5
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 4.8e-76 289.3 394 46.2
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.0e-71 272.3 219 64.8
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.8e-60 236.9 207 64.3
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 2.2e-52 210.7 177 61.6
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 3.1e-51 206.8 232 53.4
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.2e-50 204.9 245 46.9
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 1.2e-50 204.9 344 38.4
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.9e-48 197.6 205 52.2
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 2.8e-44 183.7 347 35.2
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 2.0e-42 177.6 389 36.2
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 3.5e-42 176.8 228 42.5
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 1.5e-40 171.4 109 82.6
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 7.2e-40 169.1 234 45.3
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.1e-32 145.2 91 85.7
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 4.4e-29 133.3 251 36.3
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 7.0e-27 125.9 100 66.0
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.5e-24 118.2 82 68.3
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.5e-24 118.2 82 68.3
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 1.6e-23 114.8 258 32.2
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 8.3e-20 102.4 141 49.6
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.1e-19 102.1 54 92.6
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 5.9e-18 96.3 72 65.3
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.1e-11 75.5 108 45.4
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.9e-10 69.7 58 65.5
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.3e-09 68.6 66 57.6
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-09 67.4 58 63.8
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-09 67.4 58 63.8
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-09 67.4 58 63.8
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-09 67.4 58 63.8
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-09 67.4 58 63.8
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-09 67.0 58 63.8
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 8.6e-09 65.9 204 25.5
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-08 64.7 58 62.1
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 8.0e-07 59.3 49 63.3


User provided reference genes

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