Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 5.6e-231 803.9 403 100.0
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.3e-227 792.7 421 95.7
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.5e-212 742.7 403 92.6
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.1e-194 683.3 403 83.4
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 7.2e-194 680.6 404 83.4
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 2.1e-193 679.1 403 83.1
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 6.1e-193 677.6 403 82.6
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 2.3e-192 675.6 403 82.9
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 3.0e-192 675.2 403 82.4
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 3.9e-192 674.9 403 82.1
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 2.0e-191 672.5 403 82.4
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 9.7e-191 670.2 405 82.7
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 9.7e-191 670.2 405 82.7
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 9.7e-191 670.2 405 82.7
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.7e-190 669.5 405 82.7
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 1.8e-189 666.0 405 82.2
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 7.2e-186 654.1 409 80.7
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 7.2e-186 654.1 409 80.7
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 7.2e-186 654.1 409 80.7
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 1.2e-185 653.3 428 77.8
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 7.9e-185 650.6 425 78.6
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 2.0e-183 646.0 403 79.2
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 2.2e-182 642.5 404 79.0
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 2.2e-182 642.5 403 79.4
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 3.7e-182 641.7 404 79.0
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 8.2e-182 640.6 403 78.4
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.1e-181 640.2 403 78.4
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 4.1e-181 638.3 403 78.2
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 9.1e-181 637.1 404 78.7
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.6e-180 636.3 403 77.7
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 1.0e-179 633.6 403 78.2
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.0e-179 633.6 403 78.7
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.3e-179 633.3 404 78.5
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.7e-179 632.9 403 77.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 2.2e-179 632.5 403 77.9
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 3.8e-179 631.7 403 78.4
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 5.0e-179 631.3 404 78.5
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.5e-178 629.8 408 78.2
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.5e-178 629.8 403 77.7
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 3.2e-178 628.6 406 79.1
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 3.2e-178 628.6 406 79.1
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 4.2e-178 628.2 408 77.5
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 7.2e-178 627.5 406 78.1
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 1.2e-177 626.7 406 77.6
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 2.1e-177 625.9 403 77.4
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 3.6e-177 625.2 403 77.4
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 3.6e-177 625.2 406 78.3
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.4e-176 623.2 400 76.8
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.8e-176 622.9 404 78.7
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 2.3e-176 622.5 406 78.1
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 3.0e-176 622.1 404 76.5
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 3.0e-176 622.1 379 80.5
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 3.0e-176 622.1 408 78.2
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 4.0e-176 621.7 379 81.5
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 4.0e-176 621.7 405 76.0
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 6.7e-176 620.9 406 77.1
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.7e-176 620.9 404 78.2
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 8.8e-176 620.5 406 76.4
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.5e-175 619.8 405 76.3
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.0e-175 619.4 404 78.2
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 2.6e-175 619.0 407 77.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.3e-175 618.6 381 79.8
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 3.3e-175 618.6 404 76.2
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.4e-175 618.2 445 70.6
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 7.5e-175 617.5 405 76.3
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 7.5e-175 617.5 404 77.0
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 7.5e-175 617.5 406 77.3
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.3e-174 616.7 445 70.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.3e-174 616.7 445 70.6
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.3e-174 616.7 398 78.6
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 1.7e-174 616.3 405 75.8
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.7e-174 616.3 404 76.5
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.7e-174 615.1 445 70.3
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 3.7e-174 615.1 399 77.9
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 6.3e-174 614.4 406 76.1
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 8.2e-174 614.0 406 76.8
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 8.2e-174 614.0 406 76.8
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.4e-173 613.2 405 75.3
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 2.4e-173 612.5 405 76.5
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 5.3e-173 611.3 376 80.3
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 5.3e-173 611.3 404 76.0
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 7.0e-173 610.9 361 84.8
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 9.1e-173 610.5 404 76.0
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 9.1e-173 610.5 405 77.8
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.6e-172 609.8 404 75.2
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.6e-172 609.8 406 75.4
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 2.0e-172 609.4 406 74.9
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.7e-172 609.0 429 71.8
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 3.5e-172 608.6 404 76.0
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 4.5e-172 608.2 406 74.6
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 7.7e-172 607.4 396 78.3
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 1.0e-171 607.1 405 75.6
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.3e-171 606.7 407 74.2
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 1.3e-171 606.7 375 80.5
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.7e-171 606.3 404 74.5
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 2.9e-171 605.5 376 79.0
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 8.5e-171 604.0 404 75.2
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.1e-170 603.6 403 75.2
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.9e-170 602.8 374 79.4
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.5e-170 602.4 403 74.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 2.5e-170 602.4 381 79.0
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 3.2e-170 602.1 404 73.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 3.2e-170 602.1 404 75.2
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 4.2e-170 601.7 406 75.1
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 4.2e-170 601.7 403 74.4
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.2e-170 601.7 379 78.1
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 5.5e-170 601.3 396 77.0
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 7.2e-170 600.9 386 78.0
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 7.2e-170 600.9 379 77.3
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 9.4e-170 600.5 403 74.9
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 2.1e-169 599.4 407 73.2
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.7e-169 599.0 404 73.3
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 6.1e-169 597.8 447 69.8
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.4e-168 596.7 374 79.1
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.2e-167 593.6 376 78.7
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.5e-167 593.2 347 81.6
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.0e-167 592.8 394 75.4
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 4.4e-167 591.7 377 77.7
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 5.7e-167 591.3 404 73.8
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 7.5e-167 590.9 399 74.4
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 6.3e-166 587.8 403 72.0
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.8e-165 586.3 391 75.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.2e-164 583.6 406 73.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 1.3e-163 580.1 407 75.2
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.9e-163 578.9 381 77.7
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.8e-163 578.6 404 70.0
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 8.5e-163 577.4 380 73.4
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.9e-162 576.2 380 73.2
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 9.5e-162 573.9 381 73.0
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 1.2e-161 573.5 384 72.1
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.0e-160 570.5 379 76.8
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.8e-160 569.7 399 69.7
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 4.0e-160 568.5 403 70.7
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 1.5e-159 566.6 406 70.4
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 4.4e-159 565.1 404 69.6
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.3e-158 563.5 361 74.5
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 4.9e-158 561.6 374 75.4
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.9e-158 561.6 379 72.3
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 8.3e-158 560.8 347 76.7
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 9.2e-157 557.4 381 73.0
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 2.3e-155 552.7 346 78.0
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 2.9e-155 552.4 346 78.3
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 9.5e-154 547.4 311 87.5
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.6e-153 545.4 379 74.7
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.5e-151 540.0 312 85.6
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 7.3e-146 521.2 373 71.8
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 9.5e-146 520.8 347 70.9
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 2.0e-143 513.1 404 64.9
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 4.1e-141 505.4 264 94.3
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 9.2e-141 504.2 375 70.9
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 1.5e-138 496.9 347 69.5
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 2.6e-127 459.5 357 65.5
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 3.4e-127 459.1 256 88.3
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.1e-125 454.1 271 82.7
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 4.0e-120 435.6 285 77.2
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 2.7e-116 422.9 295 71.5
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.9e-114 416.8 420 57.6
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 6.0e-108 395.2 294 67.0
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 4.3e-106 389.0 298 68.5
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 7.9e-100 368.2 234 77.8
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 4.5e-95 352.4 259 71.4
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 7.7e-79 298.5 251 64.5
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 3.2e-77 293.1 202 76.2
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.3e-70 271.2 195 71.8
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 2.5e-61 240.4 225 59.6
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 5.7e-58 229.2 134 87.3
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 7.5e-58 228.8 123 85.4
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.3e-57 225.7 123 84.6
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 1.0e-54 218.4 159 72.3
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 1.7e-49 201.1 284 38.4
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.4e-48 198.0 112 79.5
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 5.4e-48 196.1 153 70.6
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.0e-46 189.5 196 57.7
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 1.2e-28 131.7 71 85.9
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 7.5e-26 122.5 75 80.0
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 1.7e-22 111.3 73 78.1
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.5e-21 108.2 121 47.9
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 6.2e-20 102.8 72 70.8
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 2.1e-12 77.8 49 81.6
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.6e-10 70.9 57 66.7
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.6e-10 70.9 57 66.7
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 4.4e-10 70.1 48 70.8
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 2.9e-09 67.4 169 36.7
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 1.1e-08 65.5 38 84.2
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.9e-08 64.7 50 70.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.1e-07 61.2 48 68.8


User provided reference genes

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