Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 9.2e-156 553.5 280 100.0
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 3.1e-135 485.3 283 88.7
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.5e-134 483.0 285 88.4
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 8.4e-133 477.2 285 86.7
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 5.4e-132 474.6 284 85.9
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 7.1e-132 474.2 284 85.9
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.1e-131 472.6 282 85.8
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-130 469.9 287 84.3
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.3e-130 469.9 280 86.4
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.3e-130 469.9 287 84.3
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 6.6e-130 467.6 280 86.1
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 6.6e-130 467.6 280 86.1
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 8.7e-130 467.2 287 84.0
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 8.7e-130 467.2 287 84.0
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 6.9e-127 457.6 286 83.9
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 2.2e-125 452.6 287 82.9
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 4.2e-124 448.4 287 82.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 5.4e-124 448.0 280 80.4
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 8.1e-112 407.5 207 93.2
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 3.1e-111 405.6 279 73.5
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 9.0e-111 404.1 277 72.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.2e-110 403.7 264 74.6
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 2.6e-110 402.5 279 73.8
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.8e-110 401.4 264 74.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.7e-109 399.8 279 73.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.9e-108 396.4 279 73.5
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 7.1e-108 394.4 280 73.2
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 7.1e-108 394.4 305 66.6
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 6.0e-107 391.3 267 74.2
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 2.3e-106 389.4 282 72.0
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 2.3e-106 389.4 261 75.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.9e-105 386.3 269 74.0
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 3.3e-105 385.6 280 72.1
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 3.3e-105 385.6 269 74.3
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 4.3e-105 385.2 261 74.3
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 1.6e-104 383.3 270 71.9
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 8.2e-104 380.9 280 71.4
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 1.4e-103 380.2 257 76.3
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.4e-103 380.2 263 74.1
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.4e-103 380.2 263 74.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 2.4e-103 379.4 263 73.8
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 2.4e-103 379.4 278 70.5
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 5.3e-103 378.3 273 71.1
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.3e-103 378.3 273 71.1
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 1.2e-102 377.1 277 71.1
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.5e-102 376.7 273 70.7
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.5e-102 376.7 273 70.7
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.0e-102 376.3 279 70.3
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.0e-102 376.3 274 70.1
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 2.0e-102 376.3 264 73.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 4.5e-102 375.2 279 71.3
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.7e-101 373.2 275 71.3
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.2e-101 372.9 269 72.9
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 4.9e-101 371.7 278 69.8
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 8.4e-101 370.9 276 69.6
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 1.4e-100 370.2 269 69.9
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.4e-100 370.2 278 68.3
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.5e-100 369.4 279 68.8
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 5.5e-100 368.2 277 69.3
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 7.1e-100 367.9 279 69.9
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 7.1e-100 367.9 278 69.8
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.6e-99 366.7 280 68.2
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.6e-99 366.7 261 72.4
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 2.7e-99 365.9 290 68.6
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 3.5e-99 365.5 259 71.8
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.5e-99 365.5 261 71.6
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 6.1e-99 364.8 270 70.4
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.0e-98 364.0 256 72.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 1.3e-98 363.6 274 68.6
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 8.7e-98 360.9 262 71.8
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 8.7e-98 360.9 262 70.6
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.1e-97 360.5 279 67.4
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.5e-97 359.4 274 67.9
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 3.3e-97 359.0 259 69.5
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.3e-97 359.0 278 66.9
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 1.3e-96 357.1 283 67.5
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.3e-96 357.1 278 66.5
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 2.2e-96 356.3 276 67.0
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 2.8e-96 355.9 262 69.5
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 4.8e-96 355.1 270 67.8
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.4e-95 353.6 259 70.3
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 9.0e-95 350.9 258 70.5
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 9.0e-95 350.9 261 68.2
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.2e-94 350.5 273 67.0
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.5e-94 350.1 262 70.6
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.5e-94 350.1 249 72.3
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.5e-94 350.1 267 68.2
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 3.4e-94 349.0 207 80.7
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.9e-93 345.9 254 70.5
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 4.2e-92 342.0 207 78.7
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 2.7e-91 339.3 255 66.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 1.4e-90 337.0 257 68.9
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 8.8e-90 334.3 280 65.0
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.5e-89 333.6 318 57.9
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 2.5e-89 332.8 277 62.8
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 4.3e-89 332.0 228 72.8
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 5.7e-89 331.6 261 67.4
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 7.4e-89 331.3 274 63.9
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 9.7e-89 330.9 263 65.8
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 3.7e-88 328.9 274 63.1
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 6.3e-88 328.2 311 57.6
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.8e-87 326.6 289 61.2
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.3e-85 320.5 272 62.9
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.1e-84 317.4 275 60.7
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 4.2e-84 315.5 264 61.0
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.9e-77 292.7 261 59.0
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 6.7e-74 281.6 261 57.5
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 7.4e-73 278.1 235 63.8
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 6.3e-72 275.0 260 56.2
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.6e-70 269.6 270 57.0
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 3.5e-70 269.2 195 70.8
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 7.7e-70 268.1 236 59.3
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.9e-68 263.5 199 66.8
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 6.8e-66 255.0 208 63.9
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 8.8e-66 254.6 178 71.9
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 9.4e-60 234.6 176 67.0
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 4.7e-59 232.3 284 44.7
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.8e-58 230.3 177 68.9
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 6.8e-58 228.4 247 46.6
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 3.4e-57 226.1 176 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 2.8e-56 223.0 208 54.3
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 6.8e-50 201.8 170 58.2
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 6.1e-43 178.7 197 47.2
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.3e-40 171.0 278 42.4
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.0e-37 159.8 234 43.2
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 4.0e-34 149.4 288 34.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 9.5e-28 128.3 88 76.1
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 6.2e-27 125.6 272 32.7
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.0e-25 120.6 171 38.0
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 4.9e-24 115.9 83 73.5
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.5e-20 104.4 52 92.3
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 9.6e-20 101.7 57 82.5
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 3.6e-19 99.8 54 85.2
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.6e-06 57.8 173 28.9
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.5e-06 56.6 177 28.8


User provided reference genes

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