Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1998.0 942 100.0
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1777.3 957 87.3
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1773.4 952 86.8
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1771.9 952 86.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1760.3 952 86.2
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1758.8 952 85.8
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1741.1 952 85.9
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1735.3 953 85.0
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1729.5 954 84.6
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1729.5 954 84.6
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1705.3 954 84.3
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1703.0 951 83.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1701.0 951 83.6
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1700.6 951 83.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1695.2 951 83.7
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1631.7 962 80.5
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 954 80.5
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1607.4 948 80.6
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 951 79.2
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1506.9 974 73.0
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 826 84.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1498.4 979 72.2
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 987 72.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 980 72.3
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 972 72.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 975 72.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 980 72.0
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1487.2 973 72.1
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 980 71.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 982 70.9
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1484.9 980 72.1
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 958 73.0
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 981 72.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 983 71.2
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 959 72.6
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 979 71.5
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 968 71.8
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1480.7 980 71.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1476.5 982 70.5
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1475.7 979 71.5
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1475.7 975 71.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 964 72.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1474.1 984 71.6
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1471.4 979 71.2
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1468.0 954 72.1
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 982 70.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 980 70.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1466.4 969 71.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 974 70.7
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1461.4 969 72.1
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1460.7 980 70.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1458.0 976 70.4
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 970 70.8
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 982 70.3
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 978 69.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1449.9 974 70.9
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1449.9 969 70.9
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1449.5 962 71.3
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 967 70.6
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 953 71.0
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 967 71.3
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1446.8 967 71.3
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1445.6 962 71.2
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1443.3 981 69.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1442.9 975 70.9
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 981 69.6
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 979 69.8
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 957 70.3
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 970 69.2
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1441.4 964 71.1
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1441.4 965 70.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1440.6 982 69.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 971 70.2
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 948 71.1
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1437.6 981 69.3
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 976 70.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 959 70.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 990 69.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 962 70.8
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1435.2 979 69.4
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1435.2 968 69.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1434.1 978 69.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 955 70.8
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 957 70.4
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 980 70.0
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1430.6 971 69.4
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1429.5 965 70.4
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1428.7 957 70.0
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1428.7 978 69.6
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1428.3 981 68.2
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1427.2 975 69.9
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1427.2 970 68.5
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1426.0 971 69.3
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 974 69.2
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1422.1 973 68.9
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 971 69.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1420.2 971 69.0
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 967 69.8
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1418.7 971 69.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1418.3 981 68.3
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1417.1 971 69.5
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1411.7 955 69.1
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1408.7 970 68.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1407.1 980 68.2
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1404.0 981 67.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1402.5 923 70.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1385.2 970 68.6
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1379.8 972 67.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1379.0 935 69.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1368.2 983 65.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1365.5 970 67.5
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1365.1 989 66.0
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1362.1 948 67.2
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1349.3 980 66.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1348.6 996 65.7
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1347.4 956 67.6
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1335.5 869 70.9
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1313.1 871 70.5
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1305.4 1007 62.6
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1303.9 847 71.8
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1297.3 762 77.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1297.3 967 63.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1296.6 846 71.0
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1172.1 781 70.4
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1152.1 766 70.8
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1150.2 765 70.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1138.3 779 68.4
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.3e-307 1058.9 945 56.1
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.7e-300 1035.4 927 55.7
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.5e-292 1008.4 933 55.0
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.3e-290 1001.5 676 69.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.4e-278 961.1 951 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.7e-275 953.0 939 51.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.5e-266 922.5 701 62.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 9.4e-237 824.3 838 51.1
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 7.0e-224 781.6 566 65.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.6e-190 668.3 403 76.4
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.8e-126 458.0 289 74.4
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.6e-109 401.0 343 58.0
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 6.1e-95 353.2 216 77.8
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-92 345.5 374 49.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 8.3e-92 342.8 416 46.2
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.7e-82 311.2 202 67.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.6e-82 310.5 193 77.7
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.6e-77 294.7 275 54.2
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.4e-69 267.7 159 76.1
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 3.2e-67 261.2 214 60.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.3e-65 255.8 159 72.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.5e-64 252.3 690 28.8
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 7.6e-61 240.0 143 76.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-48 199.1 368 37.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.6e-45 188.3 769 24.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.0e-38 164.5 95 75.8
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.0e-33 149.8 148 52.7
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-32 145.6 143 46.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.5e-32 145.2 92 79.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 5.6e-32 144.1 91 71.4
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 7.9e-26 123.6 86 66.3
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-24 119.4 183 37.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 9.0e-22 110.2 129 45.7
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.0e-20 106.7 387 26.9
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.3e-20 106.3 169 39.1
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.9e-20 105.1 105 54.3
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 5.0e-20 104.4 121 45.5
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 8.5e-20 103.6 181 33.7
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 8.2e-15 87.0 113 46.0
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.9e-11 75.9 57 57.9
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 9.4e-11 73.6 69 52.2
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 3.0e-09 68.6 48 72.9
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.1e-08 66.6 73 49.3
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.2e-07 62.4 55 50.9
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.8e-07 61.2 115 34.8


User provided reference genes

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