Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 0.0e+00 1598.2 889 100.0
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 0.0e+00 1281.5 895 81.7
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 0.0e+00 1276.9 895 82.7
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 0.0e+00 1267.7 892 80.6
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 0.0e+00 1244.6 890 81.9
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 0.0e+00 1213.4 803 80.4
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 0.0e+00 1182.5 821 76.6
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 0.0e+00 1182.2 807 78.1
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 0.0e+00 1178.3 894 78.1
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 0.0e+00 1177.9 807 77.8
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 0.0e+00 1148.7 891 73.6
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 0.0e+00 1120.1 897 75.4
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 0.0e+00 1090.5 822 70.6
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 4.7e-262 908.3 579 82.4
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 2.9e-248 862.4 822 57.2
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.1e-247 860.5 812 58.6
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 6.8e-245 851.3 847 56.4
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 6.8e-245 851.3 835 56.5
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.3e-243 847.0 843 55.9
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 1.1e-242 844.0 826 56.1
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.1e-242 844.0 809 56.2
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 1.4e-242 843.6 791 58.5
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 8.6e-240 834.3 812 55.5
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.1e-239 833.9 829 55.5
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.1e-239 833.9 794 57.9
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 4.2e-239 832.0 842 55.6
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 3.2e-234 815.8 819 55.6
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 5.4e-234 815.1 837 54.5
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.4e-234 815.1 829 55.2
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.7e-232 810.1 780 55.5
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.9e-232 808.9 831 54.0
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 5.0e-232 808.5 827 53.8
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 6.6e-232 808.1 829 54.3
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 1.1e-231 807.4 820 54.3
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 3.3e-231 805.8 839 54.2
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 5.6e-231 805.1 814 54.1
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.0e-229 800.8 821 53.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 6.8e-229 798.1 830 54.1
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 8.9e-229 797.7 804 53.7
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 8.9e-229 797.7 724 57.7
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 1.2e-228 797.3 724 57.7
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.4e-228 795.4 830 53.4
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 2.2e-227 793.1 830 54.1
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 4.9e-227 792.0 740 57.4
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 6.4e-227 791.6 857 52.7
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 1.2e-225 787.3 777 55.6
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 4.6e-225 785.4 797 54.3
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 4.3e-223 778.9 818 53.7
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 5.6e-223 778.5 824 53.4
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 7.3e-223 778.1 779 54.4
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 7.3e-223 778.1 723 55.3
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 1.2e-222 777.3 808 53.6
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 2.1e-222 776.5 808 53.2
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.8e-222 776.2 874 50.7
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 1.8e-221 773.5 803 54.3
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 8.9e-221 771.2 807 51.9
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 1.2e-220 770.8 817 51.4
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 2.0e-220 770.0 829 52.8
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 2.6e-220 769.6 871 51.0
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 2.9e-219 766.1 725 55.9
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 6.4e-219 765.0 825 52.5
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 1.1e-218 764.2 805 52.0
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.1e-218 764.2 815 53.0
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 6.6e-216 755.0 821 51.8
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 8.6e-216 754.6 833 52.1
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 2.5e-215 753.1 819 51.2
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 3.3e-215 752.7 833 51.7
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 1.6e-214 750.4 828 50.8
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 1.6e-214 750.4 827 52.0
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 1.8e-213 746.9 928 48.0
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 1.5e-212 743.8 808 51.7
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 9.9e-212 741.1 810 53.1
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.7e-211 740.3 802 51.1
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.9e-211 738.8 733 55.3
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.9e-210 736.9 805 52.5
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 4.1e-210 735.7 795 49.9
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.2e-209 734.2 810 50.9
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 6.6e-208 728.4 801 51.7
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 3.3e-207 726.1 768 52.5
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 5.6e-207 725.3 833 51.7
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 1.1e-205 721.1 770 52.1
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 3.2e-202 709.5 836 49.8
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 6.6e-200 701.8 724 51.8
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 4.2e-194 682.6 723 52.3
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.1e-185 653.7 793 48.7
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 5.1e-184 649.0 814 47.3
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 2.4e-181 640.2 742 48.4
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 5.5e-178 629.0 612 55.2
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 3.7e-174 616.3 775 45.5
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 5.5e-170 602.4 718 47.4
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 6.1e-169 599.0 633 51.3
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 2.7e-161 573.5 635 51.2
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.8e-160 570.9 669 47.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.3e-159 566.2 452 62.4
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 3.9e-152 543.1 827 40.6
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.1e-146 525.0 477 58.5
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 2.4e-133 480.7 779 40.9
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 4.5e-132 476.5 409 57.9
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 3.8e-123 446.8 482 51.2
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 1.6e-121 441.4 525 48.4
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 4.1e-117 426.8 413 54.2
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 1.9e-109 401.4 729 36.9
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 6.8e-88 329.7 221 73.8
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 3.8e-86 323.9 721 35.6
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 6.6e-83 313.2 655 34.7
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 1.6e-81 308.5 468 42.5
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 6.2e-73 280.0 304 53.3
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 1.4e-72 278.9 702 30.6
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 3.1e-72 277.7 996 26.6
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 1.1e-64 252.7 153 82.4
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 5.3e-64 250.4 217 65.9
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 4.3e-58 230.7 297 44.4
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 1.1e-37 162.9 184 51.6
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 6.3e-33 147.1 216 41.2
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 4.4e-26 124.4 129 51.2
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 4.2e-21 107.8 63 74.6
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 7.2e-21 107.1 728 26.4
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.7e-17 95.9 140 48.6
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 2.4e-16 92.0 55 78.2
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.3e-14 86.3 84 53.6
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 3.8e-14 84.7 67 62.7
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 3.8e-14 84.7 67 62.7
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.2e-12 79.7 100 48.0
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 4.4e-10 71.2 64 51.6
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 9.8e-10 70.1 42 81.0
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 2.7e-07 62.0 70 50.0


User provided reference genes

Program Settings