Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G9340 Aethionema arabicum HOM05D001100 ORTHO05D059288 2.3e-27 124.8 60 100.0
Aa31LG9G9380 Aethionema arabicum HOM05D001100 ORTHO05D007514 1.3e-11 72.4 35 94.3
BcaB01g01868 Brassica carinata HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
BcaC04g21369 Brassica carinata HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
A09p25750 Brassica napus HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
C09p32620 Brassica napus HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
BolC9t56107H Brassica oleracea HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
BraA09t38144Z Brassica rapa HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
Thhalv10028719m.g Eutrema salsugineum HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
Sp6g03900 Schrenkiella parvula HOM05D001100 ORTHO05D007514 6.6e-11 70.1 35 88.6
AT4G05090 Arabidopsis thaliana HOM05D001100 ORTHO05D007514 1.9e-10 68.6 35 85.7
CARHR252470 Cardamine hirsuta HOM05D001100 ORTHO05D007514 1.9e-10 68.6 35 85.7
Carub.0006s3305 Capsella rubella HOM05D001100 ORTHO05D007514 1.6e-09 65.5 44 65.9
THA.LOC104806271 Tarenaya hassleriana HOM05D001100 ORTHO05D007514 2.1e-09 65.1 35 82.9
Aqoxy1G03915 Aquilegia oxysepala HOM05D001100 ORTHO05D007514 3.6e-09 64.3 41 70.7
Atru.chr10.2023 Acer truncatum HOM05D001100 ORTHO05D007514 1.1e-08 62.8 34 82.4
CsaV3_6G049640 Cucumis sativus L. HOM05D001100 ORTHO05D007514 1.8e-08 62.0 35 74.3
MBI18_g26906_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D007514 1.8e-08 62.0 33 81.8
QL05p081056 Quercus lobata HOM05D001100 ORTHO05D007514 1.8e-08 62.0 34 79.4
Sabra04G0019000 Salix brachista HOM05D001100 ORTHO05D007514 1.8e-08 62.0 34 79.4
TAR629G1200 Trochodendron aralioides HOM05D001100 ORTHO05D007514 1.8e-08 62.0 34 79.4
Lj6g0001591 Lotus japonicus HOM05D001100 ORTHO05D007514 2.3e-08 61.6 34 79.4
TWI63G1131 Tripterygium wilfordii HOM05D001100 ORTHO05D007514 2.3e-08 61.6 34 76.5
Cc02_g12340 Coffea canephora HOM05D001100 ORTHO05D007514 3.1e-08 61.2 34 76.5
Hund23599 Selenicereus undatus HOM05D001100 ORTHO05D007514 3.1e-08 61.2 34 82.4
MSTRG.15941 Avicennia marina HOM05D001100 ORTHO05D007514 4.0e-08 60.8 34 76.5
CSS0027676 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D007514 4.0e-08 60.8 34 76.5
MD05G1326400 Malus domestica HOM05D001100 ORTHO05D007514 4.0e-08 60.8 37 73.0
Nn1g06802 Nelumbo nucifera HOM05D001100 ORTHO05D007514 4.0e-08 60.8 42 66.7
Oeu038207.1 Olea europaea HOM05D001100 ORTHO05D007514 4.0e-08 60.8 34 76.5
SalBow8G3393 Salvia bowleyana HOM05D001100 ORTHO05D007514 4.0e-08 60.8 34 76.5
GSVIVG01003661001 Vitis vinifera HOM05D001100 ORTHO05D007514 4.0e-08 60.8 34 79.4
CANSAT56G3927 Cannabis sativa HOM05D001100 ORTHO05D007514 5.2e-08 60.5 34 76.5
CiPaw.10G117500 Carya illinoinensis HOM05D001100 ORTHO05D007514 5.2e-08 60.5 33 75.8
Haze_06589 Corylus avellana HOM05D001100 ORTHO05D007514 5.2e-08 60.5 34 73.5
Potri.004G033200 Populus trichocarpa HOM05D001100 ORTHO05D007514 5.2e-08 60.5 34 76.5
Sc06g0010650 Simmondsia chinensis HOM05D001100 ORTHO05D007514 5.2e-08 60.5 33 81.8
CDE02G3173 Ceratophyllum demersum HOM05D001100 ORTHO05D007514 6.8e-08 60.1 33 75.8
DCAR_028145 Daucus carota HOM05D001100 ORTHO05D007514 6.8e-08 60.1 34 73.5
PSO423G0128 Papaver somniferum HOM05D001100 ORTHO05D007514 6.8e-08 60.1 34 73.5
Cfa000342 Carpinus fangiana HOM05D001100 ORTHO05D007514 8.9e-08 59.7 34 73.5
Dinv18985 Davidia involucrata HOM05D001100 ORTHO05D007514 8.9e-08 59.7 34 73.5
Lsat_1_v5_gn_4_56421 Lactuca sativa HOM05D001100 ORTHO05D007514 8.9e-08 59.7 34 73.5
Os07g0558200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 8.9e-08 59.7 33 78.8
Peaxi162Scf00779g00210 Petunia axillaris HOM05D001100 ORTHO05D007514 8.9e-08 59.7 35 71.4
Ca_00249_v3 Cicer arietinum L. HOM05D001100 ORTHO05D007514 1.2e-07 59.3 34 76.5
Sed0027927 Sechium edule HOM05D001100 ORTHO05D007514 1.2e-07 59.3 33 75.8
Zm00001eb324080 Zea mays HOM05D001100 ORTHO05D007514 1.2e-07 59.3 33 75.8
Ciclev10015399m.g Citrus clementina HOM05D001100 ORTHO05D007514 1.5e-07 58.9 33 75.8
Migut.M01223 Erythranthe guttata HOM05D001100 ORTHO05D007514 1.5e-07 58.9 34 76.5
Prupe.4G035200 Prunus persica HOM05D001100 ORTHO05D007514 1.5e-07 58.9 37 67.6
PGR042G3840 Punica granatum HOM05D001100 ORTHO05D007514 2.0e-07 58.5 34 73.5
HanXRQChr17g0552591 Helianthus annuus HOM05D001100 ORTHO05D007514 2.6e-07 58.2 34 70.6
EL10Ac8g20544 Beta vulgaris HOM05D001100 ORTHO05D007514 3.4e-07 57.8 34 70.6
CAN.G424.26 Capsicum annuum HOM05D001100 ORTHO05D007514 3.4e-07 57.8 33 72.7
Eucgr.E03818 Eucalyptus grandis HOM05D001100 ORTHO05D007514 3.4e-07 57.8 34 70.6
Lalb_Chr20g0122331 Lupinus albus HOM05D001100 ORTHO05D007514 3.4e-07 57.8 34 70.6
Medtr2g011680 Medicago truncatula HOM05D001100 ORTHO05D007514 3.4e-07 57.8 34 73.5
Nitab4.5_0011268g0010 Nicotiana tabacum HOM05D001100 ORTHO05D007514 3.4e-07 57.8 33 72.7
unitig_37.g12335 Utricularia gibba HOM05D001100 ORTHO05D007514 3.4e-07 57.8 34 67.6
FvH4_3g03790 Fragaria vesca HOM05D001100 ORTHO05D007514 4.4e-07 57.4 34 73.5
FAN11G0383 Fragaria x ananassa HOM05D001100 ORTHO05D007514 4.4e-07 57.4 34 73.5
Glyma.13G247100 Glycine max HOM05D001100 ORTHO05D007514 4.4e-07 57.4 33 78.8
Glyma.15G066900 Glycine max HOM05D001100 ORTHO05D007514 4.4e-07 57.4 34 73.5
Sopen02g024070 Solanum pennellii HOM05D001100 ORTHO05D007514 4.4e-07 57.4 33 72.7
ATR0693G145 Amborella trichopoda HOM05D001100 ORTHO05D007514 5.8e-07 57.0 34 73.5
Gohir.A05G166200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 5.8e-07 57.0 33 72.7
Gohir.D05G169200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 5.8e-07 57.0 33 72.7
Gorai.009G174400 Gossypium raimondii HOM05D001100 ORTHO05D007514 5.8e-07 57.0 33 72.7
arahy.Tifrunner.gnm1.ann1.F2LMP4 Arachis hypogaea HOM05D001100 ORTHO05D007514 7.6e-07 56.6 34 73.5
arahy.Tifrunner.gnm1.ann1.Y92ER0 Arachis hypogaea HOM05D001100 ORTHO05D007514 7.6e-07 56.6 34 73.5
Manes.17G033700 Manihot esculenta HOM05D001100 ORTHO05D007514 9.9e-07 56.2 33 66.7
Nitab4.5_0000649g0030 Nicotiana tabacum HOM05D001100 ORTHO05D007514 9.9e-07 56.2 33 69.7
RcHm_v2.0_Chr5g0006041 Rosa chinensis HOM05D001100 ORTHO05D007514 9.9e-07 56.2 34 70.6
Solyc02g079250.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 9.9e-07 56.2 33 69.7
AUR62012491 Chenopodium quinoa HOM05D001100 ORTHO05D007514 1.3e-06 55.8 34 70.6
Duzib235G0531 Durio zibethinus HOM05D001100 ORTHO05D007514 1.3e-06 55.8 33 69.7
FAN21G0538 Fragaria x ananassa HOM05D001100 ORTHO05D007514 1.3e-06 55.8 34 70.6
PSO079G0027 Papaver somniferum HOM05D001100 ORTHO05D007514 1.3e-06 55.8 35 68.6
ECA234G0676 Erigeron canadensis HOM05D001100 ORTHO05D007514 1.7e-06 55.5 34 64.7
Gorai.011G023700 Gossypium raimondii HOM05D001100 ORTHO05D007514 1.7e-06 55.5 33 69.7
Lj1A1214T67 Lonicera japonica HOM05D001100 ORTHO05D007514 1.7e-06 55.5 40 67.5
Thecc.06G201200 Theobroma cacao HOM05D001100 ORTHO05D007514 1.7e-06 55.5 33 69.7
Nitab4.5_0021992g0010 Nicotiana tabacum HOM05D001100 ORTHO05D007514 2.2e-06 55.1 34 67.6
FAN25G0315 Fragaria x ananassa HOM05D001100 ORTHO05D007514 2.9e-06 54.7 34 70.6
Gohir.A10G021800 Gossypium hirsutum HOM05D001100 ORTHO05D007514 2.9e-06 54.7 33 66.7
Nitab4.5_0000649g0100 Nicotiana tabacum HOM05D001100 ORTHO05D007514 3.7e-06 54.3 33 69.7
Peaxi162Scf00779g00412 Petunia axillaris HOM05D001100 ORTHO05D007514 3.7e-06 54.3 33 69.7
Solyc02g079270.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 3.7e-06 54.3 33 69.7
Sopen02g024090 Solanum pennellii HOM05D001100 ORTHO05D007514 3.7e-06 54.3 33 69.7
COL.COLO4_31601 Corchorus olitorius HOM05D001100 ORTHO05D007514 4.9e-06 53.9 33 69.7
MD10G1304500 Malus domestica HOM05D001100 ORTHO05D007514 4.9e-06 53.9 34 64.7
Gohir.D10G022600 Gossypium hirsutum HOM05D001100 ORTHO05D007514 6.4e-06 53.5 33 66.7
vmacro03803 Vaccinium macrocarpon HOM05D001100 ORTHO05D007514 6.4e-06 53.5 34 64.7
VMungo0540G1113 Vigna mungo HOM05D001100 ORTHO05D007514 8.4e-06 53.1 34 64.7


User provided reference genes

Program Settings