Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 2.1e-101 372.5 203 100.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.6e-67 259.2 209 75.1
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.6e-64 248.4 212 71.7
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.3e-63 246.1 212 71.2
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 8.6e-63 244.2 212 70.3
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.5e-62 242.7 211 70.1
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.3e-62 242.3 229 62.4
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 4.3e-62 241.9 212 70.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.3e-62 241.1 229 65.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 7.3e-62 241.1 229 65.5
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.2e-61 240.4 209 71.3
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 8.1e-61 237.7 229 64.6
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 8.1e-61 237.7 209 67.0
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.8e-60 236.5 229 64.6
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-59 232.3 229 65.1
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 7.6e-59 231.1 231 63.2
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.3e-58 230.3 223 65.0
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.4e-58 228.0 215 66.0
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.9e-57 226.5 210 67.6
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.2e-57 225.7 237 57.8
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.2e-56 223.8 211 63.5
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.6e-56 223.4 219 63.9
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.6e-56 223.4 214 63.6
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-56 223.4 212 63.2
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 6.0e-56 221.5 216 64.8
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.8e-56 221.1 203 64.0
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.3e-55 220.3 216 63.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.3e-55 219.5 213 64.3
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-55 218.8 206 67.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 5.1e-55 218.4 214 64.5
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 6.6e-55 218.0 204 66.2
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 8.7e-55 217.6 204 67.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 8.7e-55 217.6 213 63.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-54 217.2 204 66.7
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.5e-54 216.9 226 60.6
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.9e-54 216.5 212 63.2
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.5e-54 216.1 212 62.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.3e-54 215.7 214 61.7
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.3e-54 215.3 214 63.1
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.3e-54 215.3 216 62.0
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 5.6e-54 214.9 204 66.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 7.3e-54 214.5 227 63.4
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 7.3e-54 214.5 213 63.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 9.6e-54 214.2 206 63.6
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.3e-53 213.8 215 62.8
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.1e-53 213.0 222 61.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 2.1e-53 213.0 210 61.9
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.8e-53 212.6 217 63.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.6e-53 212.2 209 62.7
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.2e-53 211.5 225 59.6
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.2e-53 211.5 225 59.6
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.4e-52 210.3 218 60.6
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.4e-52 210.3 208 64.4
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.4e-52 209.5 210 63.3
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.4e-52 209.5 223 58.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.1e-52 209.1 215 62.8
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 3.1e-52 209.1 126 84.9
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.0e-52 208.8 203 64.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 4.0e-52 208.8 212 61.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 5.3e-52 208.4 210 62.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 5.3e-52 208.4 198 65.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.3e-52 208.4 211 59.7
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 5.3e-52 208.4 211 59.7
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.2e-51 207.2 126 84.1
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.0e-51 206.5 127 83.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.0e-51 206.5 209 61.7
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 4.4e-51 205.3 237 57.0
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 4.4e-51 205.3 208 60.6
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.8e-51 204.9 199 65.8
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-50 203.8 240 55.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-50 203.8 240 55.0
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.9e-50 202.6 211 61.6
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.9e-50 202.6 211 60.7
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.9e-50 202.6 211 59.2
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.9e-50 201.8 212 60.8
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 6.4e-50 201.4 213 61.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 6.4e-50 201.4 209 61.2
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.4e-49 200.3 212 61.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.9e-49 199.9 218 58.7
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.4e-49 199.5 213 60.1
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 4.2e-49 198.7 200 64.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 4.2e-49 198.7 215 60.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.2e-49 198.7 233 53.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 5.4e-49 198.4 122 81.1
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 5.4e-49 198.4 216 59.7
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 7.1e-49 198.0 225 57.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 7.1e-49 198.0 192 63.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 7.1e-49 198.0 192 63.0
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.6e-48 196.8 204 59.8
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.1e-48 196.4 211 60.2
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.7e-48 196.1 213 59.2
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 7.9e-48 194.5 126 77.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.0e-47 194.1 229 55.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.0e-47 194.1 235 54.9
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.7e-47 193.4 126 80.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 3.0e-47 192.6 211 57.3
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 3.0e-47 192.6 127 77.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.1e-47 191.8 232 54.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 5.1e-47 191.8 206 61.2
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 5.1e-47 191.8 210 60.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 6.6e-47 191.4 218 58.3
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.1e-46 190.7 235 54.5
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.1e-46 190.7 229 57.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.5e-46 190.3 210 57.1
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 3.3e-46 189.1 210 59.0
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 5.6e-46 188.3 241 53.9
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 3.6e-45 185.7 206 60.2
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 3.6e-45 185.7 127 74.0
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.6e-45 185.7 213 57.3
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.6e-45 185.7 255 51.4
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.2e-45 184.9 169 63.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 6.2e-45 184.9 204 59.3
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 4.0e-44 182.2 195 59.0
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 2.9e-42 176.0 176 60.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.9e-42 176.0 183 63.4
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.4e-41 173.7 106 84.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.2e-41 172.6 204 54.9
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 5.5e-41 171.8 210 54.3
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.2e-40 170.6 105 83.8
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.2e-40 170.6 129 71.3
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 3.9e-39 165.6 198 51.5
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 8.7e-39 164.5 206 52.4
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-38 163.3 205 57.1
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.4e-36 157.1 95 81.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.5e-35 153.7 196 50.5
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-35 153.3 213 51.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.6e-35 152.9 206 50.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-34 150.6 131 64.1
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.8e-34 149.1 192 52.1
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.2e-32 144.1 123 62.6
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.5e-32 142.5 191 51.8
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.5e-32 142.5 109 71.6
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.5e-32 142.5 101 74.3
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 6.0e-32 141.7 126 57.9
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 6.0e-32 141.7 84 86.9
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.5e-30 136.3 204 45.1
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 3.3e-30 136.0 128 59.4
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 5.7e-30 135.2 194 50.5
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.4e-30 134.8 169 55.6
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.4e-28 129.8 204 47.5
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 6.9e-28 128.3 173 53.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.9e-25 120.2 103 56.3
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 9.3e-25 117.9 171 50.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 7.9e-24 114.8 220 42.3
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 4.8e-21 105.5 79 70.9
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.7e-19 98.2 82 63.4
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 8.5e-18 94.7 140 52.9
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.4e-17 94.0 151 49.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.3e-15 86.7 136 49.3
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 3.0e-15 86.3 65 66.2
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.0e-15 86.3 48 85.4
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 3.0e-15 86.3 113 45.1
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.3e-13 80.9 166 40.4
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 8.2e-13 78.2 115 39.1
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.0e-10 71.2 104 52.9
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.9e-09 67.0 41 70.7
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-08 63.9 46 69.6
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.1e-08 63.5 37 75.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.7e-08 63.2 100 41.0


User provided reference genes

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