Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 8.1e-88 327.0 162 100.0
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 6.4e-77 290.8 153 92.8
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.2e-68 261.9 189 69.8
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 7.1e-68 260.8 153 81.0
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 7.1e-68 260.8 152 80.3
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 4.6e-67 258.1 189 68.8
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 7.9e-67 257.3 189 68.8
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 7.9e-67 257.3 189 68.8
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.0e-66 256.9 189 68.8
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.8e-66 256.1 189 68.8
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.8e-66 256.1 189 68.8
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 6.7e-66 254.2 189 67.7
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 6.7e-66 254.2 152 78.9
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 4.3e-65 251.5 152 78.3
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 7.4e-65 250.8 152 79.6
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.3e-64 250.0 152 77.6
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 2.1e-64 249.2 152 78.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.1e-64 249.2 152 77.0
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 8.1e-64 247.3 152 76.3
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-63 246.9 152 75.7
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.8e-63 246.1 152 77.6
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.8e-63 246.1 152 76.3
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 2.4e-63 245.7 149 77.9
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.1e-63 245.4 152 75.7
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 3.1e-63 245.4 152 78.3
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 3.1e-63 245.4 152 77.0
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 5.3e-63 244.6 152 77.0
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.9e-63 244.2 189 65.6
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 6.9e-63 244.2 152 77.6
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.5e-62 243.0 152 77.0
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.4e-62 241.9 152 75.0
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.4e-62 241.9 152 75.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 3.4e-62 241.9 152 77.0
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 4.5e-62 241.5 148 76.4
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 4.5e-62 241.5 152 75.7
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 7.6e-62 240.7 152 75.7
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 7.6e-62 240.7 152 73.7
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.0e-61 240.4 189 64.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.0e-61 240.4 152 74.3
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.7e-61 239.6 156 71.8
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.7e-61 239.6 156 72.4
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.7e-61 239.6 150 74.0
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.2e-61 239.2 152 75.0
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.2e-61 239.2 152 75.0
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.2e-61 239.2 151 73.5
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.9e-61 238.8 149 77.2
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 3.8e-61 238.4 152 74.3
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.1e-60 236.9 153 75.2
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.1e-60 236.9 152 73.7
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.9e-60 236.1 159 69.8
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.9e-60 236.1 152 75.0
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 1.9e-60 236.1 147 76.9
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.5e-60 235.7 155 70.3
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 3.2e-60 235.3 149 73.8
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 4.2e-60 235.0 152 75.7
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 4.2e-60 235.0 147 76.2
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 5.5e-60 234.6 152 75.0
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 5.5e-60 234.6 145 77.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.3e-60 233.8 152 73.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.6e-59 233.0 151 72.8
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.7e-59 232.3 151 75.5
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 3.5e-59 231.9 151 72.8
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 7.9e-59 230.7 162 69.8
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.3e-58 229.9 151 72.2
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 5.1e-58 228.0 145 75.2
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 5.1e-58 228.0 152 71.1
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 6.7e-58 227.6 149 72.5
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 6.7e-58 227.6 152 71.7
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 8.7e-58 227.3 152 72.4
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 8.7e-58 227.3 152 70.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.1e-57 226.9 152 70.4
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 5.7e-57 224.6 152 69.7
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 7.4e-57 224.2 153 69.9
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 7.4e-57 224.2 153 69.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.1e-56 222.6 152 69.1
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.8e-56 222.2 148 70.9
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 8.2e-56 220.7 148 71.6
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.1e-55 220.3 152 70.4
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.8e-55 219.5 155 66.5
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 4.1e-55 218.4 152 71.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 5.3e-55 218.0 177 61.6
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.0e-55 217.2 162 64.8
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.4e-54 215.3 148 69.6
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.0e-53 213.8 141 74.5
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 2.2e-53 212.6 163 63.8
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.1e-52 210.3 152 65.8
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.4e-52 209.9 155 64.5
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 4.2e-52 208.4 154 66.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 9.3e-52 207.2 152 64.5
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 3.5e-51 205.3 152 64.5
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 3.5e-51 205.3 144 67.4
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 4.6e-51 204.9 149 64.4
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 6.1e-51 204.5 152 64.5
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 7.9e-51 204.1 152 63.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.8e-50 203.0 152 66.4
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.5e-49 199.9 152 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.9e-49 199.5 155 63.9
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 3.7e-48 195.3 152 62.5
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 4.8e-48 194.9 118 74.6
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 8.2e-48 194.1 152 62.5
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 5.3e-47 191.4 148 63.5
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.2e-46 190.3 152 62.5
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.5e-46 189.9 162 58.6
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.4e-46 188.7 149 62.4
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 6.5e-45 184.5 113 72.6
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 2.5e-44 182.6 147 61.2
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.2e-44 182.2 148 62.2
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 3.2e-44 182.2 116 75.0
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.2e-44 181.8 151 59.6
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.1e-43 179.5 122 71.3
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 2.7e-43 179.1 152 60.5
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.7e-43 179.1 113 71.7
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.3e-40 170.2 122 67.2
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.4e-39 166.8 151 57.0
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 4.5e-38 161.8 115 66.1
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.9e-35 151.0 127 60.6
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.9e-34 148.7 86 77.9
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.9e-34 148.7 86 77.9
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.1e-34 148.3 88 76.1
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 3.1e-31 139.0 151 49.0
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 5.3e-31 138.3 152 49.3
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.2e-24 116.3 147 38.8
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.8e-24 115.9 154 46.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 8.2e-24 114.4 117 55.6
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 5.0e-21 105.1 153 41.2
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.2e-20 102.4 97 55.7
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 7.2e-20 101.3 65 69.2
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 4.7e-19 98.6 67 71.6
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 8.8e-18 94.4 53 77.4
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 3.2e-12 75.9 70 60.0
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.2e-11 73.9 65 60.0
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.0e-10 70.9 137 34.3
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 2.2e-08 63.2 47 72.3
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.1e-07 60.8 35 85.7
A09p34380 Brassica napus HOM05D004380 ORTHO05D005134 4.1e-07 58.9 50 52.0
TPR.G40179 Trifolium pratense HOM05D004380 ORTHO05D005134 9.2e-07 57.8 34 79.4
CsaV3_7G018470 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.5e-06 55.5 37 70.3
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 7.7e-06 54.7 36 77.8


User provided reference genes

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