Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.4e-82 309.7 166 100.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 3.3e-68 261.9 166 87.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.1e-66 255.4 166 86.7
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.0e-61 240.4 195 72.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.2e-59 231.1 158 77.8
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.2e-56 222.6 166 77.7
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.9e-55 219.5 166 77.1
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.1e-55 217.6 166 77.1
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 3.0e-53 212.2 166 76.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 3.0e-53 212.2 166 76.5
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 2.1e-51 206.1 121 93.4
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 6.2e-51 204.5 159 71.1
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.4e-50 203.4 166 72.3
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.8e-50 203.0 158 70.3
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 2.4e-50 202.6 159 70.4
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 4.0e-50 201.8 158 76.6
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.9e-50 201.1 159 68.6
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.9e-50 201.1 159 68.6
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.0e-49 199.5 159 75.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.0e-49 199.5 159 69.2
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.8e-49 198.0 159 67.9
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.6e-49 197.6 156 68.6
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.3e-48 196.8 156 68.6
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.2e-48 196.1 156 68.6
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.9e-47 193.0 156 68.6
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 7.1e-47 191.0 159 66.7
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.2e-46 190.3 158 67.1
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-46 189.9 158 66.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.7e-46 189.1 158 66.5
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.7e-46 189.1 158 66.5
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 7.8e-46 187.6 158 66.5
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.3e-45 186.8 157 65.6
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.7e-45 186.4 158 65.2
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 5.1e-45 184.9 158 64.6
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 6.6e-45 184.5 155 66.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 8.7e-45 184.1 156 65.4
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.1e-44 183.7 155 65.2
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 1.9e-44 183.0 156 64.1
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.5e-44 182.6 156 65.4
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.5e-44 182.6 157 64.3
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 9.6e-44 180.6 154 65.6
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.3e-43 180.3 156 64.1
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-43 180.3 155 65.8
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.3e-43 180.3 157 64.3
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.6e-43 179.9 155 65.2
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 2.1e-43 179.5 155 66.5
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 2.8e-43 179.1 156 64.7
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.8e-43 179.1 156 64.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 4.8e-43 178.3 155 65.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 4.8e-43 178.3 147 68.0
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 6.2e-43 177.9 156 64.1
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 6.2e-43 177.9 156 64.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.1e-43 177.6 156 64.1
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.8e-42 176.4 158 62.7
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.8e-42 176.4 156 60.9
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 2.4e-42 176.0 146 67.1
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.4e-42 176.0 157 63.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.4e-42 176.0 156 60.9
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 3.1e-42 175.6 155 65.2
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 3.1e-42 175.6 156 64.1
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.1e-42 175.6 158 62.7
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.0e-42 175.3 155 65.2
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.0e-42 175.3 155 65.2
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.0e-42 175.3 156 63.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 4.0e-42 175.3 158 63.3
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.3e-42 174.9 153 65.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 6.9e-42 174.5 156 64.1
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 6.9e-42 174.5 153 65.4
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.2e-41 173.7 148 66.9
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-41 173.3 155 64.5
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.0e-41 172.9 155 65.2
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.0e-41 172.9 155 65.2
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.6e-41 172.6 158 62.0
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.4e-41 172.2 158 62.7
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.5e-41 171.8 158 65.2
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 4.5e-41 171.8 155 64.5
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 4.5e-41 171.8 156 62.2
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 7.6e-41 171.0 154 63.0
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 9.9e-41 170.6 154 62.3
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 9.9e-41 170.6 156 63.5
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.7e-40 169.9 159 62.9
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.2e-40 169.5 154 60.4
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.9e-40 169.1 155 61.9
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.9e-40 169.1 153 62.7
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.9e-40 169.1 154 63.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.9e-40 169.1 150 64.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.9e-40 169.1 158 62.0
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.9e-40 169.1 156 61.5
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.8e-40 168.7 155 63.2
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 8.4e-40 167.5 138 68.8
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.1e-39 167.2 156 65.4
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.2e-39 165.2 157 59.9
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.0e-37 160.6 154 59.7
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.3e-37 160.2 156 59.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.0e-37 159.1 153 61.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 6.7e-37 157.9 155 60.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 8.7e-37 157.5 144 63.2
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.5e-36 156.8 155 59.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.5e-36 156.8 171 56.7
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.5e-36 156.0 154 63.0
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.3e-36 155.6 153 59.5
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 3.3e-36 155.6 221 46.6
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 7.4e-36 154.5 153 58.8
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-35 153.7 153 60.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.3e-35 153.7 153 60.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.3e-35 153.7 153 60.1
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.6e-35 153.3 155 60.0
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.8e-35 152.5 156 57.1
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 4.8e-35 151.8 199 50.8
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 8.1e-35 151.0 125 65.6
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.8e-34 149.8 118 67.8
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.8e-34 149.8 154 57.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.4e-34 149.4 161 55.3
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 5.3e-34 148.3 155 59.4
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 6.9e-34 147.9 155 60.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.5e-33 146.7 147 57.8
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.5e-33 146.7 147 57.8
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.4e-33 145.6 126 68.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.6e-33 144.4 156 54.5
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 7.6e-33 144.4 155 59.4
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.7e-32 143.3 155 58.7
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.9e-32 142.5 155 58.7
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 6.5e-32 141.4 155 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.5e-31 139.4 142 56.3
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 5.5e-31 138.3 92 76.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 7.1e-31 137.9 117 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 7.1e-31 137.9 142 54.9
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 7.1e-31 137.9 153 52.3
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.1e-31 137.9 164 51.8
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 9.3e-31 137.5 157 51.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 1.6e-30 136.7 98 72.4
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.6e-30 136.7 126 63.5
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.9e-30 134.4 150 52.7
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.3e-29 132.9 155 51.0
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 3.0e-29 132.5 155 52.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.9e-29 132.1 98 69.4
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-28 130.6 128 59.4
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.3e-28 128.6 170 49.4
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 4.3e-28 128.6 153 51.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 5.7e-28 128.3 155 53.5
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 9.6e-28 127.5 156 53.2
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 3.7e-27 125.6 124 60.5
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.8e-27 125.2 90 72.2
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.8e-27 125.2 92 82.6
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 4.8e-27 125.2 93 68.8
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 8.2e-27 124.4 154 50.6
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.1e-26 124.0 119 61.3
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.8e-26 123.2 183 47.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 3.1e-26 122.5 89 71.9
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.1e-26 122.5 140 54.3
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.3e-26 121.7 92 78.3
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.3e-26 121.7 89 68.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.9e-26 121.3 91 68.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.9e-26 121.3 95 66.3
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 6.9e-26 121.3 152 50.7
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.5e-25 118.6 156 50.6
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 7.6e-25 117.9 164 50.0
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.2e-24 116.3 91 63.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.4e-24 114.4 177 45.8
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.4e-23 113.6 150 50.0
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.6e-22 110.2 166 47.6
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.7e-22 109.4 268 35.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 2.5e-20 102.8 150 48.0
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.6e-19 100.1 94 62.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 5.3e-18 95.1 153 43.1
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 8.5e-16 87.8 77 54.5
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 2.1e-14 83.2 83 48.2
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.1e-14 81.6 69 60.9
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.7e-13 78.2 99 49.5
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 5.7e-12 75.1 88 59.1
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.4e-10 70.5 65 53.8
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-10 70.1 65 56.9
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.0e-08 64.3 76 47.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.4e-07 60.5 87 43.7
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 7.9e-06 54.7 41 65.9


User provided reference genes

Program Settings