Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.8e-234 815.8 505 100.0
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.9e-151 540.0 569 65.0
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 6.1e-150 535.0 565 59.6
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 4.4e-148 528.9 563 63.9
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.8e-147 525.4 564 64.7
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 9.4e-143 511.1 601 55.2
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 8.8e-141 504.6 572 61.4
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.1e-135 487.6 561 59.5
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.2e-134 484.2 561 59.0
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.4e-133 480.7 561 59.2
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 2.3e-133 479.9 561 59.2
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 4.0e-133 479.2 563 61.3
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 3.4e-132 476.1 548 60.2
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 5.7e-124 448.7 526 51.7
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.6e-121 440.7 517 52.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.9e-119 433.7 480 61.9
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 4.3e-119 432.6 537 50.7
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 4.9e-115 419.1 614 49.3
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 7.0e-114 415.2 559 51.7
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 4.6e-113 412.5 523 56.2
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 2.3e-112 410.2 613 43.9
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 7.3e-111 405.2 513 52.6
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.2e-110 404.4 510 51.4
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 3.6e-110 402.9 564 45.4
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.4e-109 401.0 464 61.4
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.2e-108 397.9 514 51.4
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.5e-108 397.5 505 49.5
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 2.0e-108 397.1 560 45.5
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 7.5e-108 395.2 527 48.4
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 8.3e-107 391.7 575 51.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.1e-106 391.3 555 46.3
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.9e-106 390.6 562 53.0
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.9e-106 390.6 590 48.8
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 5.4e-106 389.0 550 49.5
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 9.2e-106 388.3 512 52.1
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.2e-105 387.9 529 51.4
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 2.7e-105 386.7 558 50.7
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.7e-105 386.7 539 48.1
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.5e-105 386.3 537 52.5
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.0e-105 385.6 515 49.7
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.7e-104 384.0 551 48.1
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 2.3e-104 383.6 503 52.3
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.1e-103 381.3 505 53.7
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.1e-103 381.3 505 53.7
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.9e-103 380.6 504 55.2
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.2e-102 377.9 502 54.4
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.8e-101 374.0 546 50.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.2e-101 372.5 546 50.4
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 6.8e-101 372.1 545 49.5
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 8.9e-101 371.7 476 50.6
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.5e-100 370.9 590 47.3
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.4e-100 369.8 511 54.6
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 5.8e-100 369.0 538 51.7
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 7.6e-100 368.6 502 49.2
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 2.9e-99 366.7 530 48.9
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.8e-99 366.3 589 46.9
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.9e-98 364.0 506 54.0
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.2e-97 361.3 574 45.1
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.6e-97 360.9 524 54.8
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 1.6e-97 360.9 606 47.9
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 6.0e-97 359.0 553 49.4
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.0e-96 358.2 503 51.7
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.3e-96 357.8 526 51.7
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 6.6e-96 355.5 491 52.1
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.1e-95 354.8 529 46.5
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 3.3e-95 353.2 577 46.1
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 9.6e-95 351.7 448 55.8
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 4.7e-94 349.4 552 46.6
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.1e-93 346.7 518 44.0
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 5.2e-93 345.9 588 45.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 6.9e-93 345.5 532 52.3
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.2e-92 344.7 578 48.1
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.3e-91 341.3 553 45.6
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.2e-91 340.5 508 48.8
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.4e-90 337.8 511 48.1
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.4e-90 337.0 532 52.6
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.4e-90 335.9 548 49.5
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 2.7e-89 333.6 541 49.4
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.7e-88 330.9 534 53.9
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.7e-88 330.9 584 46.1
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 5.1e-88 329.3 558 46.8
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.1e-87 328.2 655 43.8
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.3e-86 324.7 569 45.3
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.8e-86 323.6 576 46.9
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.2e-83 313.9 223 70.4
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.1e-81 307.4 509 45.2
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 5.1e-80 302.8 567 45.9
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.3e-78 298.1 482 44.0
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 4.5e-76 289.7 153 92.8
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.8e-76 289.3 235 64.3
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 3.8e-75 286.6 219 64.8
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 7.9e-73 278.9 488 47.5
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.3e-72 278.1 633 40.0
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.3e-70 271.6 494 49.4
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.7e-70 270.0 288 57.6
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.3e-69 266.2 334 51.2
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 6.5e-67 259.2 191 69.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.1e-66 258.5 569 40.9
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 5.5e-66 256.1 221 58.8
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 7.9e-65 252.3 188 65.4
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.0e-64 251.9 217 60.8
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.1e-63 248.4 148 77.7
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.3e-63 246.9 599 38.4
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 6.3e-62 242.7 168 69.6
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.1e-61 241.9 149 74.5
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 3.1e-61 240.4 566 44.5
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.1e-61 240.4 166 69.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.0e-60 237.7 464 39.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 5.0e-59 233.0 591 36.5
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 6.5e-59 232.6 148 74.3
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 3.2e-58 230.3 208 60.1
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 5.5e-58 229.6 269 48.7
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.6e-57 226.9 218 53.7
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 3.3e-55 220.3 158 65.8
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.4e-53 214.2 488 41.6
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 1.5e-52 211.5 149 66.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.4e-52 210.3 218 51.4
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 5.9e-52 209.5 236 48.7
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-47 194.9 157 62.4
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-47 194.9 113 77.0
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-45 188.3 113 73.5
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.3e-43 181.8 417 40.8
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.8e-35 153.7 86 77.9
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.8e-35 153.7 86 77.9
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 5.0e-35 153.3 219 42.0
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.6e-31 141.0 221 35.3
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 5.7e-31 139.8 152 53.9
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.7e-30 138.3 339 43.4
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.1e-29 135.6 207 43.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.4e-29 134.4 444 34.9
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 5.9e-28 129.8 170 50.6
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 8.8e-24 115.9 125 54.4
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.5e-23 115.2 203 36.9
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 7.5e-23 112.8 174 46.0
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.8e-23 112.5 152 48.0
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.8e-23 112.5 152 48.0
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 3.7e-22 110.5 127 53.5
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 4.8e-22 110.2 120 55.0
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 5.4e-21 106.7 127 53.5
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.7e-20 104.4 66 68.2
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.5e-18 97.8 53 79.2
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.1e-17 94.7 89 60.7
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 1.0e-16 92.4 76 64.5
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-14 85.5 129 40.3
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 5.4e-13 80.1 140 47.9
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 2.7e-12 77.8 62 66.1
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 3.5e-12 77.4 65 61.5
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 5.0e-11 73.6 138 34.8
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 5.6e-10 70.1 50 76.0
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 5.2e-08 63.5 85 55.3
A09p34380 Brassica napus HOM05D004380 ORTHO05D005134 2.0e-07 61.6 51 54.9
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 4.4e-07 60.5 73 45.2
TPR.G40179 Trifolium pratense HOM05D004380 ORTHO05D005134 3.7e-06 57.4 34 79.4
arahy.Tifrunner.gnm1.ann1.VXMI6Z Arachis hypogaea HOM05D004380 ORTHO05D005134 6.4e-06 56.6 50 64.0


User provided reference genes

Program Settings