Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 6.7e-93 344.0 169 100.0
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 4.2e-63 245.0 172 73.8
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 8.8e-61 237.3 172 69.8
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 3.3e-60 235.3 171 71.9
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 1.7e-59 233.0 169 72.2
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 2.2e-59 232.6 170 71.8
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 3.1e-58 228.8 170 71.2
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 3.1e-58 228.8 170 71.2
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 3.5e-49 198.7 182 57.1
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 3.5e-49 198.7 182 57.1
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.4e-45 186.8 177 55.9
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 4.0e-45 185.3 178 55.6
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.2e-44 183.7 172 57.0
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 9.8e-44 180.6 173 55.5
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 1.3e-43 180.3 176 54.5
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 1.3e-43 180.3 171 55.0
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 1.7e-43 179.9 175 55.4
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 1.7e-43 179.9 174 54.0
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.7e-43 179.9 174 54.0
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.2e-43 179.5 170 54.7
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 2.8e-43 179.1 180 53.3
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 6.3e-43 177.9 175 53.1
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 1.8e-42 176.4 171 55.0
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 3.1e-42 175.6 170 52.9
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 5.4e-42 174.9 180 54.4
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 2.7e-41 172.6 170 52.9
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 3.5e-41 172.2 173 54.9
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 4.5e-41 171.8 173 53.2
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 4.5e-41 171.8 165 53.3
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 5.9e-41 171.4 147 59.2
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 7.7e-41 171.0 122 67.2
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 1.0e-40 170.6 171 52.0
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 1.0e-40 170.6 173 53.2
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 1.3e-40 170.2 174 54.0
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 2.3e-40 169.5 153 54.9
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.3e-40 169.5 178 53.4
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.3e-40 169.5 178 53.4
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 2.9e-40 169.1 126 65.9
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.9e-40 169.1 161 53.4
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 2.9e-40 169.1 125 64.0
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 3.8e-40 168.7 166 57.8
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 5.0e-40 168.3 176 53.4
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 1.5e-39 166.8 174 51.1
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 7.2e-39 164.5 181 52.5
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 7.2e-39 164.5 181 53.6
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 7.2e-39 164.5 187 48.7
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 7.2e-39 164.5 150 58.7
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 9.5e-39 164.1 171 52.0
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 9.5e-39 164.1 122 66.4
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 2.1e-38 162.9 145 58.6
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 2.1e-38 162.9 139 61.2
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 2.8e-38 162.5 170 51.2
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 4.7e-38 161.8 162 53.1
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 8.0e-38 161.0 125 63.2
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 1.0e-37 160.6 182 50.5
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.4e-37 160.2 144 56.9
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 6.8e-37 157.9 145 57.2
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 8.9e-37 157.5 177 50.8
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 8.9e-37 157.5 145 57.2
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 1.2e-36 157.1 166 50.0
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 1.2e-36 157.1 120 60.8
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 1.2e-36 157.1 177 52.0
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.5e-36 156.8 125 63.2
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 1.5e-36 156.8 132 57.6
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 1.5e-36 156.8 149 55.0
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 2.6e-36 156.0 196 45.4
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 2.6e-36 156.0 143 56.6
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 3.4e-36 155.6 206 47.1
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 9.8e-36 154.1 125 60.0
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 2.2e-35 152.9 143 55.9
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 2.8e-35 152.5 154 52.6
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 8.3e-35 151.0 211 43.1
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 1.4e-34 150.2 116 69.8
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 1.7e-32 143.3 228 40.4
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 3.9e-32 142.1 168 47.0
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 5.0e-32 141.7 159 52.8
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 1.5e-31 140.2 87 72.4
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.9e-31 139.8 129 54.3
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.9e-31 139.8 130 59.2
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 7.3e-31 137.9 91 72.5
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 4.7e-30 135.2 114 57.9
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 6.1e-30 134.8 115 56.5
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 8.0e-30 134.4 120 55.8
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 5.2e-29 131.7 120 59.2
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 4.4e-28 128.6 109 58.7
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 2.2e-27 126.3 103 59.2
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 3.7e-27 125.6 114 58.8
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 1.9e-26 123.2 175 44.6
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 9.2e-26 120.9 103 54.4
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 9.2e-26 120.9 98 60.2
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.0e-24 117.5 169 40.8
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 6.6e-24 114.8 96 58.3
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 1.4e-21 107.1 133 43.6
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 8.9e-21 104.4 100 52.0
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 3.4e-20 102.4 118 44.9
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 4.4e-20 102.1 105 56.2
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 7.8e-17 91.3 116 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.1e-15 87.4 149 38.3
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 1.4e-13 80.5 53 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.7e-11 73.6 70 51.4
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.1e-10 70.9 122 40.2
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 7.8e-09 64.7 100 40.0
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 1.5e-07 60.5 111 36.9
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 7.3e-07 58.2 66 42.4
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 7.3e-07 58.2 75 41.3
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 9.5e-07 57.8 62 46.8
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 1.6e-06 57.0 88 43.2
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 43.5
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.6e-06 57.0 79 43.0
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 2.1e-06 56.6 75 40.0
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 2.1e-06 56.6 82 39.0
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.8e-06 56.2 100 35.0
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.8e-06 56.2 100 35.0
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.8e-06 56.2 100 35.0
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.6e-06 55.8 110 33.6
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 3.6e-06 55.8 79 39.2
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 4.7e-06 55.5 79 39.2
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 4.7e-06 55.5 79 39.2
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 6.2e-06 55.1 107 34.6
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 6.2e-06 55.1 111 32.4
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 6.2e-06 55.1 129 33.3
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 6.2e-06 55.1 90 33.3
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 8.1e-06 54.7 80 36.2
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 8.1e-06 54.7 108 32.4
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 8.1e-06 54.7 107 34.6


User provided reference genes

Program Settings