Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 3.4e-148 528.5 301 100.0
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 9.7e-111 404.1 305 76.1
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 1.2e-108 397.1 314 73.2
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 1.3e-107 393.7 314 74.8
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 1.7e-107 393.3 237 85.7
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 2.2e-107 392.9 234 85.5
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 6.5e-107 391.3 239 86.2
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 1.4e-106 390.2 240 85.4
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 2.7e-105 386.0 240 83.8
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 2.0e-103 379.8 313 73.2
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 2.0e-103 379.8 313 73.2
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 4.4e-103 378.6 313 70.6
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 9.7e-103 377.5 313 72.8
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 1.3e-102 377.1 234 82.5
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 1.4e-98 363.6 239 77.8
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 2.3e-80 303.1 209 73.7
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 4.4e-79 298.9 192 75.5
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 2.8e-78 296.2 198 74.7
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 2.4e-77 293.1 197 72.6
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 3.1e-77 292.7 205 70.2
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 5.4e-77 292.0 204 71.1
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 1.6e-76 290.4 253 64.4
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 2.0e-76 290.0 253 62.5
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 2.7e-76 289.7 258 60.1
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 3.5e-76 289.3 252 61.5
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 5.9e-76 288.5 214 69.2
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 7.7e-76 288.1 201 72.1
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 1.0e-75 287.7 225 66.7
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 1.0e-75 287.7 252 61.1
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 1.3e-75 287.3 201 69.2
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 1.7e-75 287.0 191 73.8
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 2.3e-75 286.6 252 59.5
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 5.0e-75 285.4 199 71.4
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 8.6e-75 284.6 254 60.2
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 8.6e-75 284.6 196 73.0
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 1.1e-74 284.3 253 60.1
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 1.9e-74 283.5 259 57.9
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 1.9e-74 283.5 243 60.5
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 2.5e-74 283.1 252 60.3
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 4.2e-74 282.3 259 58.7
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 4.2e-74 282.3 221 65.2
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 7.2e-74 281.6 246 61.0
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 1.6e-73 280.4 192 71.9
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 1.6e-73 280.4 211 66.8
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 2.8e-73 279.6 210 64.8
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 6.1e-73 278.5 187 72.7
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 8.0e-73 278.1 196 73.5
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 1.8e-72 276.9 194 70.6
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 2.3e-72 276.6 238 62.6
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 4.0e-72 275.8 205 66.8
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 5.2e-72 275.4 205 66.8
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 5.2e-72 275.4 185 71.4
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 1.2e-71 274.2 208 66.8
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 1.2e-71 274.2 208 66.8
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 2.0e-71 273.5 210 65.7
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 2.6e-71 273.1 232 59.1
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 2.6e-71 273.1 198 69.2
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 2.6e-71 273.1 189 70.4
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 7.5e-71 271.6 188 67.0
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 9.8e-71 271.2 234 61.5
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 1.3e-70 270.8 180 72.8
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 2.2e-70 270.0 193 70.5
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 2.8e-70 269.6 202 64.9
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 3.7e-70 269.2 214 65.0
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 6.3e-70 268.5 187 70.1
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 8.3e-70 268.1 185 68.6
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 8.3e-70 268.1 212 61.8
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 3.1e-69 266.2 181 69.6
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 3.1e-69 266.2 178 71.9
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 4.1e-69 265.8 182 73.1
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 9.2e-69 264.6 190 66.3
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 1.2e-68 264.2 262 54.6
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 2.0e-68 263.5 202 62.9
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 2.7e-68 263.1 210 61.4
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 3.5e-68 262.7 176 72.7
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 3.5e-68 262.7 200 66.5
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 7.8e-68 261.5 186 67.2
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 1.0e-67 261.2 202 64.4
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 1.3e-67 260.8 217 61.8
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 1.3e-67 260.8 266 54.9
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 3.8e-67 259.2 239 60.3
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 1.9e-66 256.9 205 63.9
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 1.9e-66 256.9 200 62.5
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 2.5e-66 256.5 213 63.4
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 3.3e-66 256.1 224 58.5
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 5.6e-66 255.4 245 57.6
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 7.3e-66 255.0 202 65.3
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 1.6e-65 253.8 185 66.5
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 3.6e-65 252.7 192 65.6
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 1.8e-64 250.4 182 67.6
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 4.0e-64 249.2 234 57.3
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 1.7e-62 243.8 178 69.7
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 4.1e-61 239.2 217 59.0
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 4.1e-61 239.2 167 67.1
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 9.2e-61 238.0 186 61.8
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 1.1e-58 231.1 217 59.4
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 9.8e-55 218.0 168 66.1
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 1.7e-54 217.2 179 64.2
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 3.1e-48 196.4 208 53.4
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 1.2e-47 194.5 134 73.1
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 1.2e-44 184.5 115 73.9
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 1.2e-44 184.5 135 68.1
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 5.8e-39 165.6 168 56.5
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 2.7e-36 156.8 155 60.0
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 1.5e-34 151.0 171 58.5
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 2.1e-33 147.1 125 55.2
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 1.8e-32 144.1 164 45.7
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 1.8e-32 144.1 164 45.7
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 2.4e-32 143.7 238 37.4
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 1.1e-26 124.8 145 53.1
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 1.9e-26 124.0 158 43.0
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 3.3e-26 123.2 95 61.1
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 1.6e-25 120.9 98 54.1
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 1.3e-22 111.3 80 72.5
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 1.3e-22 111.3 80 72.5
Psat7g189800 Pisum sativum HOM05D006827 ORTHO05D008725 2.5e-18 97.1 76 61.8
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 5.8e-15 85.9 72 61.1
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 1.7e-14 84.3 101 43.6
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 4.6e-12 76.3 164 34.1
BcaB06g25810 Brassica carinata HOM05D006827 ORTHO05D023991 5.1e-11 72.8 42 85.7
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 5.1e-11 72.8 148 33.1
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 7.6e-07 58.9 130 32.3
TAR633G1668 Trochodendron aralioides HOM05D006827 ORTHO05D023991 2.2e-06 57.4 45 66.7


User provided reference genes

Program Settings