Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 3.2e-173 611.7 315 100.0
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 2.6e-151 538.9 316 88.3
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.6e-151 538.9 316 88.3
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 2.6e-151 538.9 316 88.3
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 3.4e-151 538.5 315 87.6
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 5.9e-151 537.7 316 88.0
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 5.9e-151 537.7 316 88.0
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.7e-150 536.2 316 87.7
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 8.5e-150 533.9 315 86.3
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.9e-149 532.7 316 86.7
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.2e-148 530.0 299 89.0
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 3.0e-147 525.4 299 89.0
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 3.9e-147 525.0 315 85.1
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 6.7e-147 524.2 299 88.6
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 8.8e-147 523.9 299 88.3
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 8.8e-147 523.9 299 88.3
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 7.4e-146 520.8 315 85.7
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 1.7e-145 519.6 316 85.1
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 5.3e-144 514.6 316 82.3
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 4.5e-135 485.0 311 75.9
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.7e-135 484.2 315 75.9
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 1.3e-134 483.4 315 75.6
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 5.0e-134 481.5 315 74.9
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.1e-133 480.3 315 74.9
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.0e-131 473.8 315 73.0
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.4e-131 473.4 313 75.1
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 3.0e-131 472.2 311 75.2
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.0e-130 469.5 312 74.4
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 3.3e-130 468.8 311 74.0
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 3.3e-130 468.8 315 73.0
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 7.5e-130 467.6 311 72.3
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 1.3e-129 466.8 311 72.7
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.3e-129 466.8 311 74.3
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 1.3e-129 466.8 311 74.6
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 3.7e-129 465.3 311 73.0
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 6.3e-129 464.5 311 72.7
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 6.3e-129 464.5 311 74.3
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.4e-128 463.4 312 73.7
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.4e-128 463.4 299 74.2
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.8e-128 463.0 311 72.3
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 3.1e-128 462.2 314 74.2
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 3.1e-128 462.2 314 71.0
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.1e-128 462.2 314 72.0
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.2e-127 460.3 311 71.7
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 2.7e-127 459.1 311 72.3
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 3.5e-127 458.8 310 73.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 4.5e-127 458.4 310 73.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.0e-126 457.2 311 72.7
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.0e-126 457.2 314 72.6
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.8e-126 455.3 257 86.4
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 8.5e-126 454.1 311 72.3
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.5e-125 453.4 311 69.8
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.5e-125 453.4 309 72.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.5e-125 453.4 313 71.9
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 3.2e-125 452.2 311 71.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 4.2e-125 451.8 311 71.7
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 5.5e-125 451.4 313 71.6
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 9.4e-125 450.7 311 71.1
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 9.4e-125 450.7 311 71.7
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.2e-124 450.3 312 71.2
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.6e-124 449.9 311 71.1
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.6e-124 449.9 314 70.4
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.7e-124 448.4 313 71.2
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.0e-123 447.2 311 70.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.0e-123 447.2 311 72.7
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 1.0e-123 447.2 311 72.3
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.4e-123 446.8 311 70.7
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 4.0e-123 445.3 311 70.1
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 5.2e-123 444.9 314 72.3
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 5.2e-123 444.9 338 66.0
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 5.2e-123 444.9 314 69.7
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 6.8e-123 444.5 293 74.1
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 6.8e-123 444.5 310 71.3
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 8.8e-123 444.1 314 70.1
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 2.0e-122 443.0 311 70.7
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.4e-122 442.2 314 71.0
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 4.4e-122 441.8 324 68.8
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.4e-122 441.8 324 68.8
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.4e-122 441.8 324 68.8
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 9.8e-122 440.7 314 68.8
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.7e-121 439.9 315 69.5
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 1.7e-121 439.9 317 69.1
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 2.2e-121 439.5 324 68.5
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.8e-121 439.1 324 68.2
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.7e-121 438.7 311 67.8
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.8e-121 438.3 315 68.9
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 8.3e-121 437.6 304 73.0
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 4.1e-120 435.3 320 68.8
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.1e-120 434.1 334 66.8
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.6e-119 433.3 314 68.2
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 2.7e-119 432.6 314 67.8
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 7.7e-119 431.0 310 68.4
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.0e-118 430.6 289 73.0
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.7e-118 429.9 314 66.9
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 3.8e-118 428.7 311 67.8
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 8.6e-118 427.6 310 69.4
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 3.2e-117 425.6 285 73.0
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 3.2e-117 425.6 310 69.4
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.2e-117 425.2 314 67.5
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.1e-116 422.9 311 67.2
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.1e-116 422.9 338 63.0
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.8e-116 422.5 312 69.2
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.0e-115 420.6 291 68.7
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 5.2e-115 418.3 266 75.6
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 5.2e-115 418.3 311 66.6
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 6.8e-115 417.9 310 67.7
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.5e-114 416.8 291 69.8
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.6e-114 416.0 315 66.7
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 5.7e-114 414.8 310 67.4
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 7.5e-114 414.5 308 68.5
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.7e-113 413.3 313 66.8
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 3.7e-113 412.1 311 66.9
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 6.3e-113 411.4 300 68.7
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.6e-110 401.4 253 75.1
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.3e-109 398.7 311 65.3
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.0e-107 392.5 328 63.4
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.2e-106 390.6 316 64.9
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.6e-106 389.4 326 63.5
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 2.0e-90 336.7 311 56.9
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.4e-90 335.9 311 56.9
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.8e-90 335.1 296 57.8
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 7.5e-90 334.7 233 70.0
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 7.8e-87 324.7 220 70.9
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 6.6e-86 321.6 297 55.6
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.9e-85 320.1 298 56.0
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.3e-85 318.9 223 70.0
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.6e-79 300.4 276 56.9
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.3e-78 296.6 310 52.3
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 4.3e-77 292.4 307 50.2
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.2e-71 274.2 274 52.9
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 7.8e-71 271.6 304 48.4
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.4e-64 250.8 293 48.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 3.1e-59 233.0 230 53.0
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 7.6e-50 201.8 295 42.0
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.4e-43 181.0 184 57.1
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 9.4e-40 168.3 107 73.8
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 1.9e-32 144.1 93 76.3
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 3.0e-30 136.7 94 72.3
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 6.3e-28 129.0 90 71.1
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.4e-24 117.9 90 72.2
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.4e-24 117.9 90 72.2
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.5e-24 115.9 79 74.7
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 3.5e-18 96.7 90 61.1
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 3.0e-14 83.6 113 45.1
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 5.2e-06 56.2 96 43.8


User provided reference genes

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