Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.8e-69 265.4 159 100.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.7e-59 232.3 159 88.7
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.5e-57 226.5 159 88.7
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.8e-56 222.2 160 86.2
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 3.6e-56 221.9 159 86.2
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 4.7e-56 221.5 159 86.2
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 4.7e-56 221.5 159 86.2
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 4.7e-56 221.5 159 86.2
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.0e-55 220.3 159 85.5
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.3e-55 219.2 130 89.2
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.0e-55 218.4 130 88.5
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 8.9e-55 217.2 159 84.9
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.5e-54 216.5 128 89.1
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 2.6e-54 215.7 159 84.3
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.3e-53 213.4 153 86.9
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.9e-53 212.2 168 81.5
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.9e-50 202.2 130 83.8
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 8.6e-50 200.7 122 83.6
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 8.6e-50 200.7 122 86.1
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.5e-49 197.2 152 80.9
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.6e-48 196.4 120 81.7
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 3.6e-48 195.3 152 78.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 3.6e-48 195.3 124 82.3
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 4.7e-48 194.9 157 75.8
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 8.0e-48 194.1 122 80.3
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.0e-47 193.7 121 81.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.0e-47 193.7 118 82.2
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.0e-47 193.7 123 80.5
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.0e-47 193.7 124 79.0
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.0e-47 193.7 158 75.9
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.4e-47 193.4 122 79.5
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.3e-47 192.6 152 79.6
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.3e-47 192.6 152 79.6
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 4.0e-47 191.8 121 81.8
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 4.0e-47 191.8 121 81.8
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 5.2e-47 191.4 122 80.3
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 6.8e-47 191.0 164 66.5
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 8.9e-47 190.7 122 79.5
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.2e-46 190.3 154 76.6
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 1.2e-46 190.3 120 79.2
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.2e-46 190.3 122 80.3
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.2e-46 190.3 122 80.3
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.5e-46 189.9 120 79.2
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.0e-46 189.5 120 79.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.6e-46 189.1 121 80.2
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 4.4e-46 188.3 152 75.7
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 4.4e-46 188.3 152 77.6
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 4.4e-46 188.3 128 75.8
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 5.8e-46 188.0 120 79.2
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 5.8e-46 188.0 152 77.6
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.8e-46 188.0 120 80.0
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 5.8e-46 188.0 152 75.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 7.5e-46 187.6 153 77.1
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 9.8e-46 187.2 127 76.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 9.8e-46 187.2 122 78.7
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 75.6
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.3e-45 186.8 120 80.0
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.3e-45 186.8 120 80.8
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-45 186.4 120 79.2
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.7e-45 186.4 124 74.2
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.2e-45 186.0 127 76.4
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.7e-45 185.3 123 76.4
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.7e-45 185.3 123 78.0
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.7e-45 185.3 124 75.8
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.4e-45 184.5 122 77.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.4e-44 183.3 122 78.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 1.4e-44 183.3 122 77.0
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.9e-44 183.0 123 76.4
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.9e-44 183.0 122 76.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.4e-44 182.6 123 74.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.4e-44 182.6 123 74.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.4e-44 182.6 152 75.7
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.2e-44 182.2 152 76.3
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.2e-44 182.2 152 76.3
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 3.2e-44 182.2 122 75.4
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 7.0e-44 181.0 122 77.0
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 7.0e-44 181.0 124 74.2
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 9.2e-44 180.6 123 73.2
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 74.6
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 2.7e-43 179.1 122 75.4
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 3.5e-43 178.7 121 76.9
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 3.5e-43 178.7 120 76.7
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 4.6e-43 178.3 154 66.9
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 4.6e-43 178.3 152 75.0
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 6.0e-43 177.9 120 75.8
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 7.8e-43 177.6 161 67.7
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.7e-42 176.4 121 71.1
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 3.0e-42 175.6 152 73.7
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 3.9e-42 175.3 125 70.4
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 5.0e-42 174.9 120 76.7
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 5.0e-42 174.9 123 74.8
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 8.6e-42 174.1 120 72.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.6e-42 174.1 122 74.6
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.5e-41 173.3 150 71.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.5e-41 172.6 155 71.6
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.3e-41 172.2 123 69.1
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 9.5e-41 170.6 122 71.3
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 9.5e-41 170.6 125 71.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 9.5e-41 170.6 123 69.1
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.1e-40 169.5 121 69.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.1e-40 169.5 122 73.8
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.8e-40 169.1 150 69.3
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.3e-39 166.0 128 64.1
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 5.2e-39 164.9 116 74.1
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 8.9e-39 164.1 119 69.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.0e-38 162.9 125 64.0
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 5.8e-38 161.4 150 62.7
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 5.8e-38 161.4 122 70.5
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.2e-37 159.5 125 65.6
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.9e-37 159.1 200 49.5
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 4.1e-36 155.2 193 49.7
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.6e-35 153.3 152 69.1
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 6.0e-35 151.4 96 80.2
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.7e-34 149.8 100 78.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 2.3e-34 149.4 127 60.6
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 2.3e-34 149.4 96 79.2
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 3.0e-34 149.1 120 63.3
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 3.9e-34 148.7 98 77.6
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-33 146.4 97 76.3
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 3.3e-33 145.6 153 59.5
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.6e-32 143.3 128 57.0
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-31 140.2 89 79.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 9.9e-30 134.0 120 57.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.7e-29 133.3 125 53.6
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.7e-29 132.1 122 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 4.1e-28 128.6 120 53.3
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.1e-28 128.6 127 52.8
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.0e-26 124.0 83 74.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.9e-22 107.5 102 57.8
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.7e-21 106.7 81 69.1
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 8.4e-21 104.4 96 57.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 8.4e-21 104.4 96 57.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.6e-17 91.7 94 55.3
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 7.3e-17 91.3 63 68.3
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.4e-12 77.0 54 64.8
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 3.2e-12 75.9 70 62.9
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 5.4e-12 75.1 70 62.9
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 5.4e-12 75.1 70 62.9
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 2.4e-07 59.7 45 60.0


User provided reference genes

Program Settings