Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.2e-200 703.0 351 100.0
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.4e-139 498.4 347 72.9
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.4e-139 498.4 347 72.9
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.4e-139 498.4 347 72.9
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.4e-139 498.4 347 72.9
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 5.7e-139 498.0 347 72.9
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 7.5e-139 497.7 347 74.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 9.8e-139 497.3 347 74.1
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 4.9e-138 495.0 347 72.3
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.9e-135 485.7 347 70.6
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 3.9e-135 485.3 347 73.8
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 6.6e-135 484.6 346 72.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 8.6e-135 484.2 347 72.6
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 5.6e-134 481.5 348 71.6
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.1e-133 479.6 348 71.6
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 3.1e-124 449.1 348 67.5
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.0e-107 393.3 302 63.6
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 3.4e-107 392.5 316 62.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.4e-105 387.1 321 61.4
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 3.2e-105 386.0 322 59.6
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 7.1e-105 384.8 302 62.6
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.6e-104 383.6 325 61.2
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 3.5e-104 382.5 325 59.1
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 6.0e-104 381.7 324 57.7
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 6.0e-104 381.7 304 62.2
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.7e-103 380.2 325 61.2
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.3e-103 379.8 302 62.3
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.1e-102 377.5 321 57.6
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.9e-102 376.7 324 59.3
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 5.6e-102 375.2 326 58.6
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 5.6e-102 375.2 318 59.4
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 7.3e-102 374.8 337 59.1
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 7.3e-102 374.8 322 59.9
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 7.3e-102 374.8 328 59.1
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 9.6e-102 374.4 332 57.2
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.3e-101 374.0 327 59.3
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.6e-101 373.6 302 61.3
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.6e-101 373.6 337 58.8
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 2.1e-101 373.2 327 57.8
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 3.1e-100 369.4 302 59.6
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.1e-100 369.4 325 56.6
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 5.3e-100 368.6 299 59.5
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 9.0e-100 367.9 336 58.9
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.2e-99 367.5 315 56.5
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.5e-99 367.1 326 58.9
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.5e-99 367.1 329 56.2
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 2.0e-99 366.7 327 57.5
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 2.0e-99 366.7 314 56.7
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 4.4e-99 365.5 301 60.1
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 5.8e-99 365.2 315 56.8
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.2e-98 363.2 327 56.6
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.8e-98 362.5 324 57.1
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.8e-98 362.5 324 56.8
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-98 362.1 324 56.8
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 8.4e-98 361.3 322 56.5
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.4e-97 360.5 304 60.2
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.7e-96 356.3 315 55.6
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.0e-95 352.8 325 54.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.9e-95 352.4 315 57.8
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 6.6e-95 351.7 325 57.5
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.1e-94 350.9 317 55.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.9e-94 350.1 317 55.5
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 2.5e-94 349.7 328 54.9
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 2.4e-92 343.2 313 55.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.2e-91 340.9 302 56.3
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 7.6e-91 338.2 326 52.8
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 9.9e-91 337.8 327 54.1
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.3e-90 337.4 315 55.6
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.7e-90 337.0 301 56.1
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.9e-90 336.3 427 45.2
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 4.9e-90 335.5 312 53.5
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.4e-90 335.1 313 54.6
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.1e-89 334.3 311 54.7
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 2.7e-88 329.7 302 53.3
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.0e-87 327.8 321 53.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 5.1e-87 325.5 330 53.0
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 5.1e-87 325.5 338 50.9
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 7.4e-86 321.6 323 53.6
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 3.2e-81 306.2 273 58.2
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 9.3e-81 304.7 305 51.1
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 1.6e-80 303.9 264 58.7
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 3.5e-80 302.8 308 50.3
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 3.0e-79 299.7 317 52.4
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.5e-78 296.6 315 49.8
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 4.3e-78 295.8 304 51.3
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.0e-75 287.0 308 48.1
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 2.6e-75 286.6 299 50.8
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.3e-74 284.3 297 51.2
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 9.3e-73 278.1 229 61.1
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.1e-72 275.4 278 51.8
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.4e-68 263.5 219 60.3
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 2.5e-65 253.4 288 47.6
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.1e-62 244.6 306 45.4
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.5e-62 243.4 223 56.1
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.8e-61 239.2 254 49.2
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.7e-58 230.7 247 50.6
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 6.5e-58 228.8 190 62.6
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.5e-58 228.8 218 50.5
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 8.5e-58 228.4 255 47.1
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.2e-57 226.5 189 62.4
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 3.2e-57 226.5 349 42.1
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.7e-54 215.7 195 55.4
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-53 213.4 194 54.6
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.3e-53 212.2 195 54.4
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-52 211.5 194 54.6
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-52 210.7 192 55.2
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.8e-52 210.7 194 54.1
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.5e-51 206.1 187 58.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.7e-48 196.8 157 58.6
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.8e-45 186.0 153 57.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 7.0e-44 182.2 149 68.5
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.6e-40 171.0 302 38.1
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.0e-39 166.4 204 45.6
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.2e-38 164.9 317 36.3
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 6.3e-37 159.1 220 44.5
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.0e-34 151.8 128 57.8
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.3e-34 151.4 128 57.8
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 5.0e-34 149.4 198 43.9
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.0e-31 140.2 108 63.0
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.5e-30 137.9 117 55.6
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.0e-30 137.5 283 33.9
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.3e-29 132.5 125 56.0
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.3e-29 132.1 125 55.2
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 1.7e-26 124.4 110 55.5
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.1e-25 121.7 93 65.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 5.7e-22 109.4 304 29.6
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 2.7e-19 100.5 86 58.1
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 3.5e-19 100.1 91 54.9
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.6e-17 92.8 52 71.2
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 6.0e-11 72.8 42 69.0
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 2.1e-08 64.3 121 38.0
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-07 62.0 39 69.2


User provided reference genes

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