Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1668.3 808 100.0
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 824 70.8
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1181.4 805 71.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1172.5 806 71.1
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 804 71.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 804 70.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 808 70.0
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 805 70.6
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1141.3 840 68.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1139.4 826 68.8
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 804 69.8
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1124.8 813 67.8
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1117.8 801 69.3
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1114.4 804 67.8
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1112.8 808 67.9
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1107.8 807 67.8
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1105.5 807 67.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1105.1 815 67.2
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 807 67.4
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 836 65.0
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 804 66.7
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1087.0 843 64.2
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1078.9 765 70.1
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.4e-310 1068.5 825 64.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 7.7e-288 993.8 811 62.8
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 1.4e-284 983.0 809 60.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 4.5e-280 968.0 802 59.9
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.3e-279 966.5 798 60.0
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 6.5e-279 964.1 801 59.4
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 8.5e-279 963.8 807 59.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.1e-278 963.4 805 58.8
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.5e-278 963.0 803 58.4
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 5.5e-278 961.1 805 58.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 9.4e-278 960.3 804 58.3
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 9.4e-278 960.3 805 58.6
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 2.7e-277 958.7 803 58.5
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.4e-276 956.4 811 58.3
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 1.8e-276 956.1 808 57.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.3e-276 955.7 803 58.3
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 5.2e-276 954.5 803 58.4
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.1e-275 953.4 806 57.2
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 9.7e-275 950.3 805 58.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 2.2e-274 949.1 803 58.2
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 2.8e-274 948.7 804 58.6
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.8e-273 946.0 807 57.6
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 4.1e-273 944.9 801 57.7
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 4.1e-273 944.9 803 58.4
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 7.0e-273 944.1 801 57.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 5.9e-272 941.0 800 58.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 7.7e-272 940.6 803 57.3
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 6.5e-271 937.6 806 57.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 5.5e-270 934.5 805 57.6
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 3.0e-268 928.7 805 57.4
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 3.0e-268 928.7 817 55.7
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.2e-267 926.8 799 56.8
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 4.4e-267 924.9 804 57.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 7.5e-267 924.1 805 56.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 1.3e-266 923.3 806 56.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 2.2e-266 922.5 806 56.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 8.3e-266 920.6 731 59.6
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 2.4e-265 919.1 817 55.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 4.1e-265 918.3 808 56.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 2.0e-264 916.0 806 56.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 2.7e-264 915.6 802 56.1
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 1.7e-263 912.9 802 57.2
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.2e-263 912.5 805 58.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.5e-262 909.8 845 54.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 7.2e-262 907.5 808 55.8
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 2.1e-261 906.0 810 54.9
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 3.6e-261 905.2 800 55.5
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.0e-260 903.7 807 56.3
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 1.0e-260 903.7 780 57.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 2.3e-260 902.5 805 56.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 2.3e-260 902.5 809 56.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 4.0e-260 901.7 803 56.0
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 1.2e-259 900.2 803 55.5
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 1.5e-259 899.8 802 55.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 2.6e-259 899.0 806 55.3
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 5.7e-259 897.9 800 56.4
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 9.8e-259 897.1 805 55.5
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 3.7e-258 895.2 807 56.0
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 6.3e-258 894.4 730 58.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 1.8e-257 892.9 734 58.9
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.1e-257 892.1 742 59.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 4.1e-257 891.7 803 55.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 5.4e-257 891.3 805 55.0
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 7.0e-257 891.0 806 55.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.6e-256 889.8 812 53.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 3.5e-256 888.6 731 57.9
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 1.7e-255 886.3 766 57.2
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 8.6e-255 884.0 803 53.9
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.5e-254 883.2 799 54.6
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 3.3e-254 882.1 731 58.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 1.6e-253 879.8 920 49.0
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.4e-252 876.7 732 56.6
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.3e-252 875.9 806 54.3
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 5.2e-252 874.8 808 54.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-251 873.6 800 57.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 2.0e-251 872.8 815 53.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 4.4e-251 871.7 815 53.9
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.7e-250 869.8 724 58.6
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.8e-250 869.0 763 56.5
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 8.3e-250 867.5 805 53.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.9e-247 859.0 796 53.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 8.6e-247 857.4 731 54.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.1e-246 857.1 820 52.3
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.2e-245 853.6 818 52.3
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 8.9e-244 847.4 802 51.1
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 6.0e-240 834.7 800 52.1
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.3e-239 833.6 805 52.4
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 3.9e-239 832.0 797 51.6
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.9e-234 815.8 787 51.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.6e-232 810.1 801 50.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 7.8e-232 807.7 806 50.7
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.6e-229 800.0 733 53.5
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.7e-229 798.5 836 49.8
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 8.9e-228 794.3 800 54.2
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 8.4e-226 787.7 871 47.6
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 5.1e-223 778.5 719 56.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 5.1e-215 751.9 812 47.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 6.6e-215 751.5 474 73.6
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.9e-207 725.7 663 58.2
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.5e-206 723.8 813 45.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 4.2e-201 705.7 753 48.2
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 6.7e-199 698.4 733 46.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.1e-188 664.5 602 55.3
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.0e-186 657.9 752 45.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.9e-184 648.3 625 52.5
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-174 617.8 567 58.4
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 6.3e-173 612.1 438 65.3
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.8e-170 602.8 621 50.6
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.2e-168 597.8 447 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.1e-161 574.7 629 46.3
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 7.2e-161 572.0 554 52.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 4.2e-145 519.6 889 34.8
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.2e-144 518.1 432 56.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.0e-130 471.9 533 47.8
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 6.2e-128 462.6 478 50.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 8.9e-127 458.8 537 44.9
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 3.0e-114 417.2 325 59.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.2e-101 374.4 270 64.8
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 7.8e-99 365.9 368 51.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 6.7e-90 336.3 856 32.4
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.4e-79 301.2 243 58.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.2e-78 298.9 354 47.5
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.1e-76 289.7 365 45.8
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.6e-75 288.5 530 32.8
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.1e-63 249.2 738 28.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 3.2e-60 237.7 307 43.3
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.0e-58 232.6 333 40.2
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.3e-58 231.5 354 39.5
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.3e-56 225.7 202 55.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 1.5e-44 185.7 137 61.3
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.8e-42 178.7 107 72.9
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.7e-38 164.9 171 49.1
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.3e-34 151.8 193 43.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.3e-34 151.8 99 71.7
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.8e-27 128.3 160 43.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 4.1e-23 114.4 84 63.1
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 5.0e-21 107.5 87 59.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.5e-20 105.1 79 64.6
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 8.0e-19 100.1 186 34.4
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 5.4e-15 87.4 84 51.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 9.2e-15 86.7 65 56.9
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 6.6e-13 80.5 52 67.3
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.5e-12 78.6 91 42.9
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.2e-11 76.3 81 48.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.8e-11 75.1 44 65.9
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.4e-10 72.8 40 75.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.0e-10 71.2 39 76.9
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.5e-09 69.3 62 58.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-08 64.7 96 43.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-08 64.7 96 43.8
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.7e-06 58.5 45 57.8


User provided reference genes

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