Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 6.3e-108 394.0 189 100.0
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 5.0e-97 357.8 189 89.4
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 7.2e-96 354.0 189 87.3
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 1.0e-94 350.1 189 86.8
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 1.0e-94 350.1 189 86.8
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 1.8e-91 339.3 189 83.6
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.4e-91 339.0 189 83.1
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 7.0e-91 337.4 189 83.1
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 2.0e-90 335.9 189 82.5
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 2.0e-90 335.9 189 82.5
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.0e-89 333.6 190 82.6
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 4.4e-85 318.2 189 77.8
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 5.5e-80 301.2 188 75.5
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 7.2e-80 300.8 189 73.5
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 2.8e-79 298.9 190 72.1
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.0e-78 295.4 190 72.6
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.6e-77 292.4 190 72.1
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.6e-77 292.4 190 72.1
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 4.4e-77 291.6 186 72.6
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.4e-77 291.6 186 72.6
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.7e-77 291.2 186 72.6
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.7e-77 291.2 186 72.6
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 9.8e-77 290.4 186 72.0
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 9.8e-77 290.4 189 73.0
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 1.3e-76 290.0 190 71.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 2.2e-76 289.3 190 70.0
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 3.7e-76 288.5 190 73.2
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 4.9e-76 288.1 190 71.6
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 6.3e-76 287.7 190 72.6
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 4.1e-75 285.0 190 69.5
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 5.4e-75 284.6 186 72.6
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-74 283.5 186 71.5
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 2.7e-74 282.3 189 69.8
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 3.5e-74 282.0 189 70.9
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 4.5e-74 281.6 187 69.0
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 4.5e-74 281.6 189 69.3
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 7.8e-74 280.8 190 68.4
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 7.8e-74 280.8 190 70.0
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.3e-73 280.0 186 71.5
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 1.7e-73 279.6 191 68.6
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 2.3e-73 279.3 190 70.0
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 2.9e-73 278.9 190 67.9
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 2.9e-73 278.9 191 68.6
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 2.9e-73 278.9 186 70.4
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.9e-73 278.9 186 71.0
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 3.8e-73 278.5 188 71.3
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 6.6e-73 277.7 190 70.0
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 6.6e-73 277.7 186 68.8
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 6.6e-73 277.7 186 68.3
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 6.6e-73 277.7 187 68.4
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 8.6e-73 277.3 186 69.4
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.9e-72 276.2 186 69.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.9e-72 276.2 187 67.9
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 5.6e-72 274.6 190 68.4
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 7.3e-72 274.2 186 68.3
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 9.5e-72 273.9 187 68.4
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 9.5e-72 273.9 187 66.8
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 1.2e-71 273.5 189 69.8
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.6e-71 273.1 189 67.2
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 1.6e-71 273.1 192 69.3
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 2.1e-71 272.7 190 65.8
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 2.1e-71 272.7 190 66.3
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 2.8e-71 272.3 189 68.3
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 1.0e-70 270.4 190 65.3
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.0e-70 270.4 190 67.9
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 1.0e-70 270.4 187 67.4
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.4e-70 270.0 186 66.7
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.8e-70 269.6 187 69.0
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 3.1e-70 268.9 190 68.4
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 5.2e-70 268.1 188 67.6
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 5.2e-70 268.1 189 68.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.6e-69 265.8 188 68.1
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 4.4e-69 265.0 188 68.1
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 5.8e-69 264.6 190 65.3
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 7.5e-69 264.2 189 68.3
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 9.8e-69 263.8 205 62.4
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 1.3e-68 263.5 195 66.7
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.7e-68 263.1 186 67.7
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 2.9e-68 262.3 190 66.8
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 8.3e-68 260.8 190 63.7
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.4e-67 260.0 190 64.7
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 2.4e-67 259.2 189 67.2
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 7.0e-67 257.7 190 67.4
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 1.2e-66 256.9 185 64.9
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 1.2e-66 256.9 182 66.5
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.6e-66 256.5 221 57.0
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.0e-66 256.1 187 63.6
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 7.8e-66 254.2 226 54.9
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.7e-65 253.1 188 63.8
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 6.6e-65 251.1 189 64.6
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 2.5e-64 249.2 192 63.0
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.8e-63 245.7 189 63.5
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.6e-63 245.4 186 60.8
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 3.6e-63 245.4 182 62.6
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 3.6e-63 245.4 189 60.3
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.7e-63 245.0 186 63.4
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 6.2e-63 244.6 188 61.7
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 4.0e-62 241.9 190 58.9
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 8.9e-62 240.7 186 59.7
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.6e-61 239.2 183 62.3
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 7.5e-61 237.7 145 73.8
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 9.8e-61 237.3 189 61.4
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 3.7e-60 235.3 183 60.7
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 4.1e-59 231.9 176 64.2
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 5.4e-59 231.5 183 59.0
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.7e-58 229.2 184 58.2
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.9e-57 225.3 179 60.3
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 4.3e-56 221.9 145 69.0
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 1.8e-54 216.5 190 58.4
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 4.0e-54 215.3 186 57.5
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 5.2e-54 214.9 185 56.2
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 6.8e-54 214.5 186 59.1
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 8.9e-54 214.2 190 57.9
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.5e-53 213.4 148 69.6
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.0e-53 213.0 183 53.6
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-52 210.3 189 57.7
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 3.7e-52 208.8 187 54.5
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.3e-49 200.3 186 53.2
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.1e-48 197.2 132 68.9
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 2.4e-35 152.9 111 63.1
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 4.6e-34 148.7 82 86.6
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 8.1e-31 137.9 83 75.9
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.2e-28 129.8 110 55.5
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.5e-24 116.3 103 56.3
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.4e-22 109.8 115 48.7
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.2e-19 99.0 94 48.9
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 8.7e-17 91.3 100 50.0


User provided reference genes

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