Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 2.1e-164 582.4 324 100.0
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.5e-101 373.6 326 70.9
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 7.0e-99 364.8 326 70.6
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.9e-96 356.7 322 69.9
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 4.2e-96 355.5 321 68.5
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.8e-94 350.1 324 69.4
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 7.5e-93 344.7 319 68.0
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 2.9e-89 332.8 317 68.5
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 8.0e-87 324.7 315 67.3
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 8.0e-87 324.7 315 67.3
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 8.0e-87 324.7 315 67.3
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.5e-85 320.5 317 61.2
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.2e-84 316.6 319 65.8
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 1.6e-82 310.5 313 66.5
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.0e-65 253.1 169 77.5
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 3.0e-65 253.1 169 77.5
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 3.0e-65 253.1 170 76.5
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 3.0e-65 253.1 167 79.0
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 5.1e-65 252.3 310 53.9
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 6.6e-65 251.9 166 81.3
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-64 250.4 169 76.3
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.5e-64 250.0 172 75.0
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 9.6e-64 248.1 172 74.4
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 9.6e-64 248.1 162 77.8
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.6e-63 247.3 172 74.4
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 2.1e-63 246.9 319 53.6
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.8e-63 246.5 170 77.1
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 3.6e-63 246.1 330 52.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 8.1e-63 245.0 169 76.3
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 8.1e-63 245.0 316 51.3
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 5.2e-62 242.3 162 74.1
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 5.2e-62 242.3 301 50.5
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 5.2e-62 242.3 169 74.6
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.5e-61 240.7 169 75.1
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.6e-61 240.0 324 49.4
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.3e-60 237.7 264 55.3
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 2.2e-60 236.9 175 73.1
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.2e-60 236.9 166 72.3
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 3.8e-60 236.1 323 51.1
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 3.8e-60 236.1 190 66.3
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.9e-59 233.8 162 74.7
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 4.2e-59 232.6 190 65.3
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 4.2e-59 232.6 165 72.1
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 7.1e-59 231.9 161 74.5
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.1e-58 230.3 158 76.6
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 4.6e-58 229.2 314 46.8
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 6.0e-58 228.8 325 48.6
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 6.0e-58 228.8 170 68.8
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 6.0e-58 228.8 161 74.5
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 2.3e-57 226.9 216 59.3
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 3.9e-57 226.1 162 73.5
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 5.1e-57 225.7 166 73.5
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-56 224.6 167 73.1
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.5e-56 224.2 161 73.9
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 3.3e-56 223.0 320 48.8
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 4.3e-56 222.6 307 48.5
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.6e-55 220.7 162 71.6
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 2.1e-55 220.3 160 68.8
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.8e-55 219.9 160 70.6
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.8e-55 219.2 232 56.5
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 6.2e-55 218.8 332 44.3
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.1e-54 218.0 263 52.9
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.4e-54 217.6 315 48.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 3.1e-54 216.5 162 67.9
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 3.1e-54 216.5 199 60.8
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.1e-54 216.5 199 60.8
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 9.0e-54 214.9 162 69.8
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 2.0e-53 213.8 314 47.5
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.4e-53 213.0 158 70.3
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 4.4e-53 212.6 171 66.7
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 4.4e-53 212.6 174 69.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 7.6e-53 211.8 159 68.6
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.7e-52 210.7 163 66.3
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 6.4e-52 208.8 309 45.6
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 6.4e-52 208.8 172 67.4
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 8.4e-52 208.4 163 66.3
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.1e-51 208.0 162 69.1
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.9e-51 207.2 162 68.5
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.9e-51 207.2 178 65.2
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 2.4e-51 206.8 315 49.8
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 7.1e-51 205.3 149 71.1
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.2e-50 204.5 162 69.1
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 2.1e-50 203.8 159 68.6
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 7.8e-50 201.8 159 69.2
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 2.3e-49 200.3 348 41.7
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.1e-49 199.1 170 65.9
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.1e-49 199.1 167 66.5
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.9e-48 197.2 313 45.4
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.9e-48 197.2 351 43.0
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.6e-47 194.1 180 60.0
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 2.8e-47 193.4 264 48.5
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 4.8e-47 192.6 199 56.3
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 5.3e-46 189.1 213 54.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 4.2e-43 179.5 160 61.2
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 4.2e-43 179.5 288 47.9
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.6e-42 177.6 149 63.8
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.6e-42 177.6 149 63.8
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 3.5e-42 176.4 159 60.4
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 2.3e-41 173.7 320 41.2
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 6.7e-41 172.2 160 60.0
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 2.1e-39 167.2 124 71.0
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 2.8e-39 166.8 169 56.2
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 3.7e-39 166.4 272 42.3
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 9.0e-38 161.8 280 45.4
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 1.1e-35 154.8 104 76.9
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 1.0e-33 148.3 124 65.3
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 1.0e-28 131.7 107 67.3
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 8.4e-28 128.6 250 39.2
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-22 110.9 107 59.8
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 9.0e-22 108.6 64 84.4
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 2.6e-21 107.1 161 42.2
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.0e-20 105.1 72 75.0
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.3e-20 104.8 160 39.4
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 6.7e-17 92.4 112 52.7
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 7.7e-13 79.0 73 61.6
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 7.2e-11 72.4 52 65.4
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.7e-10 69.7 40 82.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 4.7e-10 69.7 61 57.4
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.4e-09 68.2 49 73.5
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 4.4e-08 63.2 133 33.8
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 7.4e-08 62.4 44 68.2
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 3.7e-07 60.1 209 28.7
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 4.8e-07 59.7 35 77.1
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 4.8e-07 59.7 107 40.2
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 6.3e-07 59.3 195 36.9
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 2.4e-06 57.4 45 62.2


User provided reference genes

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