Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 4.1e-44 181.0 92 100.0
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 5.3e-44 180.6 92 98.9
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 9.4e-41 169.9 92 90.2
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.3e-39 165.2 93 92.5
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 6.7e-39 163.7 92 89.1
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.1e-38 162.9 93 90.3
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 5.7e-38 160.6 93 89.2
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 7.4e-38 160.2 93 90.3
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.7e-37 159.1 92 85.9
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 2.8e-37 158.3 92 85.9
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 4.8e-37 157.5 92 85.9
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 4.8e-37 157.5 92 85.9
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.4e-36 156.0 92 84.8
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.4e-36 156.0 93 88.2
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.8e-36 155.6 92 84.8
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.8e-36 155.6 92 84.8
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 2.4e-36 155.2 92 84.8
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 2.4e-36 155.2 92 84.8
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 2.4e-36 155.2 92 84.8
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 3.1e-36 154.8 93 87.1
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 3.1e-36 154.8 93 84.9
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.6e-35 152.5 92 79.3
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.5e-35 151.0 92 81.5
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.9e-35 150.6 92 77.2
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.3e-34 149.4 92 78.3
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.0e-34 147.5 92 78.3
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.0e-34 147.5 92 78.3
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.1e-33 146.4 91 82.4
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.2e-33 144.8 92 79.3
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 2.7e-32 141.7 82 85.4
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 2.7e-32 141.7 92 73.9
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 2.7e-32 141.7 92 71.7
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 2.7e-32 141.7 94 76.6
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 6.1e-32 140.6 93 74.2
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 8.0e-32 140.2 92 72.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 8.0e-32 140.2 92 72.8
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.8e-31 139.0 79 82.3
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 3.0e-31 138.3 95 73.7
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 6.7e-31 137.1 92 71.7
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 1.2e-30 136.3 92 69.6
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.2e-30 136.3 92 73.9
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.5e-30 136.0 91 71.4
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 1.5e-30 136.0 93 74.2
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 2.6e-30 135.2 94 71.3
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 3.3e-30 134.8 90 72.2
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.3e-30 134.8 94 72.3
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 3.3e-30 134.8 92 72.8
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 5.7e-30 134.0 92 73.9
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.7e-30 134.0 92 70.7
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 9.7e-30 133.3 91 69.2
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 9.7e-30 133.3 95 70.5
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 1.3e-29 132.9 91 70.3
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.3e-29 132.9 92 70.7
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 71.3
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 71.3
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 2.2e-29 132.1 92 67.4
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 2.2e-29 132.1 92 69.6
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 2.2e-29 132.1 92 69.6
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 2.2e-29 132.1 94 70.2
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.2e-29 132.1 92 71.7
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.8e-29 131.7 94 69.1
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.8e-29 131.7 94 69.1
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.8e-29 131.7 92 68.5
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.8e-29 131.7 92 68.5
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.8e-29 131.7 92 68.5
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 2.8e-29 131.7 93 71.0
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.8e-29 131.7 94 72.3
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.7e-29 131.3 94 71.3
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.7e-29 131.3 94 71.3
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 3.7e-29 131.3 93 72.0
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 3.7e-29 131.3 94 70.2
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 3.7e-29 131.3 93 71.0
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 4.8e-29 131.0 94 72.3
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 6.3e-29 130.6 92 70.7
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.3e-29 130.6 91 67.0
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 6.3e-29 130.6 94 67.0
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 8.2e-29 130.2 93 71.0
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 8.2e-29 130.2 93 72.0
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 8.2e-29 130.2 94 69.1
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 8.2e-29 130.2 93 68.8
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 8.2e-29 130.2 93 68.8
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 8.2e-29 130.2 94 69.1
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.1e-28 129.8 93 71.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 1.1e-28 129.8 91 65.9
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.4e-28 129.4 91 69.2
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.4e-28 129.4 93 69.9
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 1.4e-28 129.4 95 70.5
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.4e-28 129.4 91 69.2
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.4e-28 129.4 93 69.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.8e-28 129.0 95 69.5
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 2.4e-28 128.6 93 67.7
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 2.4e-28 128.6 92 67.4
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 3.1e-28 128.3 93 66.7
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 4.1e-28 127.9 92 69.6
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 4.1e-28 127.9 94 66.0
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 5.3e-28 127.5 90 68.9
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 7.0e-28 127.1 94 68.1
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.0e-28 127.1 93 69.9
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 7.0e-28 127.1 92 67.4
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 9.1e-28 126.7 85 68.2
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.0e-27 125.6 79 73.4
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 2.0e-27 125.6 94 68.1
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 2.7e-27 125.2 92 67.4
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.7e-27 125.2 91 67.0
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 3.5e-27 124.8 91 62.6
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 4.5e-27 124.4 93 66.7
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.5e-27 124.4 91 65.9
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 5.9e-27 124.0 92 64.1
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 5.9e-27 124.0 94 67.0
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 7.7e-27 123.6 94 68.1
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 7.7e-27 123.6 93 65.6
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 7.7e-27 123.6 90 65.6
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.0e-26 123.2 94 68.1
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.0e-26 123.2 86 67.4
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.3e-26 122.9 93 68.8
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.3e-26 122.9 94 67.0
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.3e-26 122.9 90 65.6
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.7e-26 122.5 93 66.7
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.7e-26 122.5 93 68.8
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 1.7e-26 122.5 90 66.7
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.9e-26 121.7 94 68.1
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 3.8e-26 121.3 92 66.3
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 3.8e-26 121.3 93 67.7
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 5.0e-26 120.9 94 64.9
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 5.0e-26 120.9 94 67.0
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 5.0e-26 120.9 86 66.3
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 6.5e-26 120.6 93 62.4
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 6.5e-26 120.6 91 65.9
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 6.5e-26 120.6 91 60.4
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 8.5e-26 120.2 91 62.6
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 8.5e-26 120.2 82 65.9
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 8.5e-26 120.2 86 66.3
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 3.2e-25 118.2 93 63.4
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 3.2e-25 118.2 88 62.5
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 9.4e-25 116.7 94 59.6
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 1.2e-24 116.3 93 60.2
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 2.7e-24 115.2 94 60.6
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 3.6e-24 114.8 94 59.6
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.7e-24 114.4 90 62.2
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 6.1e-24 114.0 94 57.4
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 8.0e-24 113.6 94 61.7
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.0e-23 113.2 93 62.4
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.0e-23 113.2 91 60.4
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.4e-23 112.8 93 59.1
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.4e-23 112.8 93 59.1
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.5e-22 109.4 90 58.9
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 2.0e-22 109.0 82 69.5
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 1.3e-21 106.3 81 65.4
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 2.2e-21 105.5 84 66.7
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 4.8e-21 104.4 82 65.9
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 8.3e-21 103.6 78 61.5
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 1.8e-20 102.4 101 54.5
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 2.7e-19 98.6 65 70.8
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.5e-19 98.2 91 53.8
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 5.9e-19 97.4 79 59.5
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 7.7e-19 97.1 97 50.5
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.3e-18 96.3 81 63.0
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.8e-18 94.7 74 58.1
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.2e-16 89.7 60 66.7
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.6e-16 88.2 91 47.3
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 1.2e-14 83.2 66 57.6
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.5e-14 82.8 73 52.1
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 7.5e-14 80.5 72 55.6
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.7e-13 78.2 63 50.8
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.4e-12 75.5 73 39.7
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 4.1e-12 74.7 95 37.9
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 3.5e-11 71.6 71 42.3
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 5.0e-10 67.8 52 67.3
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 5.0e-10 67.8 52 67.3
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 5.6e-09 64.3 38 68.4
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.0e-07 58.5 73 34.2
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 6.8e-07 57.4 69 39.1
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.2e-06 56.6 72 37.5


User provided reference genes

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