Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G13100 Aethionema arabicum HOM05D001143 ORTHO05D059389 4.6e-38 160.6 75 100.0
Aa31LG2G15880 Aethionema arabicum HOM05D001143 ORTHO05D059256 2.5e-23 111.7 55 92.7
Aa31LG9G12700 Aethionema arabicum HOM05D001143 ORTHO05D001457 9.1e-18 93.2 54 83.3
CARHR181560 Cardamine hirsuta HOM05D001143 ORTHO05D001457 3.0e-13 78.2 54 66.7
THA.LOC104803399 Tarenaya hassleriana HOM05D001143 ORTHO05D001457 8.8e-13 76.6 48 72.9
BcaB07g30608 Brassica carinata HOM05D001143 ORTHO05D001457 1.5e-12 75.9 48 70.8
THA.LOC104806952 Tarenaya hassleriana HOM05D001143 ORTHO05D001457 1.5e-12 75.9 48 72.9
BcaC03g16517 Brassica carinata HOM05D001143 ORTHO05D001457 2.0e-12 75.5 48 70.8
A02p27410 Brassica napus HOM05D001143 ORTHO05D001457 2.0e-12 75.5 48 70.8
C02p43360 Brassica napus HOM05D001143 ORTHO05D001457 2.0e-12 75.5 48 70.8
BolC2t10388H Brassica oleracea HOM05D001143 ORTHO05D001457 2.0e-12 75.5 48 70.8
BraA02t07768Z Brassica rapa HOM05D001143 ORTHO05D001457 2.0e-12 75.5 48 70.8
Aqoxy5G01752 Aquilegia oxysepala HOM05D001143 ORTHO05D001457 2.6e-12 75.1 70 55.7
CSS0037941 Camellia sinensis var. sinensis HOM05D001143 ORTHO05D001457 3.4e-12 74.7 54 68.5
Carub.0008s0638 Capsella rubella HOM05D001143 ORTHO05D001457 3.4e-12 74.7 48 68.8
Thhalv10003180m.g Eutrema salsugineum HOM05D001143 ORTHO05D001457 4.4e-12 74.3 48 68.8
Sp2g07070 Schrenkiella parvula HOM05D001143 ORTHO05D001457 5.7e-12 73.9 54 63.0
AT5G42650 Arabidopsis thaliana HOM05D001143 ORTHO05D001457 7.5e-12 73.6 48 68.8
AL8G18730 Arabidopsis lyrata HOM05D001143 ORTHO05D001457 1.3e-11 72.8 48 66.7
Nn5g29425 Nelumbo nucifera HOM05D001143 ORTHO05D001457 1.3e-11 72.8 54 64.8
Gohir.D02G093300 Gossypium hirsutum HOM05D001143 ORTHO05D001457 2.8e-11 71.6 54 61.1
Gorai.005G105800 Gossypium raimondii HOM05D001143 ORTHO05D001457 2.8e-11 71.6 54 61.1
Dinv36023 Davidia involucrata HOM05D001143 ORTHO05D001457 3.7e-11 71.2 54 64.8
COL.COLO4_26396 Corchorus olitorius HOM05D001143 ORTHO05D001457 4.8e-11 70.9 54 63.0
TAR625G0489 Trochodendron aralioides HOM05D001143 ORTHO05D001457 8.3e-11 70.1 54 63.0
Actinidia15286 Actinidia chinensis HOM05D001143 ORTHO05D001457 1.1e-10 69.7 54 63.0
Gohir.A03G115300 Gossypium hirsutum HOM05D001143 ORTHO05D001457 1.1e-10 69.7 54 59.3
Dinv39366 Davidia involucrata HOM05D001143 ORTHO05D001457 1.4e-10 69.3 54 61.1
PGR083G1502 Punica granatum HOM05D001143 ORTHO05D001457 1.4e-10 69.3 48 64.6
Gohir.A06G013200 Gossypium hirsutum HOM05D001143 ORTHO05D001457 1.8e-10 68.9 54 59.3
Gorai.010G013600 Gossypium raimondii HOM05D001143 ORTHO05D001457 1.8e-10 68.9 54 59.3
TWI12G0614 Tripterygium wilfordii HOM05D001143 ORTHO05D001457 2.4e-10 68.6 54 59.3
TWI12G0789 Tripterygium wilfordii HOM05D001143 ORTHO05D001457 2.4e-10 68.6 54 59.3
CDE04G0883 Ceratophyllum demersum HOM05D001143 ORTHO05D001457 3.1e-10 68.2 48 62.5
Lsat_1_v5_gn_1_19560 Lactuca sativa HOM05D001143 ORTHO05D001457 4.1e-10 67.8 48 64.6
Nn6g32159 Nelumbo nucifera HOM05D001143 ORTHO05D001457 4.1e-10 67.8 54 59.3
Oeu004681.1 Olea europaea HOM05D001143 ORTHO05D001457 4.1e-10 67.8 56 60.7
Potri.002G130700 Populus trichocarpa HOM05D001143 ORTHO05D001457 4.1e-10 67.8 70 54.3
MBI16_g31338_MAGBIO Magnolia biondii HOM05D001143 ORTHO05D001457 5.3e-10 67.4 46 65.2
Sabra02G0102800 Salix brachista HOM05D001143 ORTHO05D001457 5.3e-10 67.4 70 54.3
Atru.chr13.579 Acer truncatum HOM05D001143 ORTHO05D001457 7.0e-10 67.0 54 59.3
TWI36G1060 Tripterygium wilfordii HOM05D001143 ORTHO05D001457 7.0e-10 67.0 48 62.5
Gohir.D06G010700 Gossypium hirsutum HOM05D001143 ORTHO05D001457 9.1e-10 66.6 54 57.4
HanXRQChr09g0268361 Helianthus annuus HOM05D001143 ORTHO05D001457 9.1e-10 66.6 54 57.4
Lj4C47T10 Lonicera japonica HOM05D001143 ORTHO05D001457 9.1e-10 66.6 54 61.1
SalBow8G3724 Salvia bowleyana HOM05D001143 ORTHO05D001457 9.1e-10 66.6 56 57.1
CSS0012232 Camellia sinensis var. sinensis HOM05D001143 ORTHO05D001457 1.2e-09 66.2 54 61.1
Lsat_1_v5_gn_4_122741 Lactuca sativa HOM05D001143 ORTHO05D001457 1.2e-09 66.2 54 55.6
RcHm_v2.0_Chr6g0300221 Rosa chinensis HOM05D001143 ORTHO05D001457 1.2e-09 66.2 74 52.7
ClCG08G015460 Citrullus lanatus HOM05D001143 ORTHO05D001457 1.6e-09 65.9 54 57.4
Sopen11g028480 Solanum pennellii HOM05D001143 ORTHO05D001457 1.6e-09 65.9 82 45.1
Actinidia29848 Actinidia chinensis HOM05D001143 ORTHO05D001457 2.0e-09 65.5 47 59.6
ECA247G1067 Erigeron canadensis HOM05D001143 ORTHO05D001457 2.0e-09 65.5 48 60.4
HanXRQChr09g0268351 Helianthus annuus HOM05D001143 ORTHO05D001457 2.0e-09 65.5 54 57.4
Prupe.1G386300 Prunus persica HOM05D001143 ORTHO05D001457 2.0e-09 65.5 54 57.4
Rhsim07G0234400 Rhododendron simsii HOM05D001143 ORTHO05D001457 2.0e-09 65.5 54 59.3
SalBow7G3041 Salvia bowleyana HOM05D001143 ORTHO05D001457 2.0e-09 65.5 48 62.5
CANSAT78G1411 Cannabis sativa HOM05D001143 ORTHO05D001457 2.7e-09 65.1 54 57.4
CANSAT78G2260 Cannabis sativa HOM05D001143 ORTHO05D001457 2.7e-09 65.1 54 57.4
Cc10_g03580 Coffea canephora HOM05D001143 ORTHO05D001457 2.7e-09 65.1 54 61.1
Duzib093G0269 Durio zibethinus HOM05D001143 ORTHO05D001457 2.7e-09 65.1 54 55.6
FAN20G1876 Fragaria x ananassa HOM05D001143 ORTHO05D001457 2.7e-09 65.1 48 62.5
Gohir.A05G260700 Gossypium hirsutum HOM05D001143 ORTHO05D001457 2.7e-09 65.1 48 60.4
Gohir.D05G262900 Gossypium hirsutum HOM05D001143 ORTHO05D001457 2.7e-09 65.1 48 60.4
Gorai.009G274700 Gossypium raimondii HOM05D001143 ORTHO05D001457 2.7e-09 65.1 48 60.4
PSO170G2081 Papaver somniferum HOM05D001143 ORTHO05D001457 2.7e-09 65.1 54 57.4
Ciclev10000825m.g Citrus clementina HOM05D001143 ORTHO05D001457 3.5e-09 64.7 48 60.4
Haze_02519 Corylus avellana HOM05D001143 ORTHO05D001457 3.5e-09 64.7 55 56.4
Haze_02521 Corylus avellana HOM05D001143 ORTHO05D001457 3.5e-09 64.7 55 56.4
MD00G1038400 Malus domestica HOM05D001143 ORTHO05D001457 3.5e-09 64.7 54 55.6
Nitab4.5_0008239g0010 Nicotiana tabacum HOM05D001143 ORTHO05D001457 3.5e-09 64.7 45 66.7
Oeu015612.1 Olea europaea HOM05D001143 ORTHO05D001457 3.5e-09 64.7 59 54.2
Peaxi162Scf00280g00065 Petunia axillaris HOM05D001143 ORTHO05D001457 3.5e-09 64.7 45 66.7
Solyc11g069800.1 Solanum lycopersicum HOM05D001143 ORTHO05D001457 3.5e-09 64.7 82 43.9
THA.LOC104819457 Tarenaya hassleriana HOM05D001143 ORTHO05D001457 3.5e-09 64.7 47 63.8
AUR62040103 Chenopodium quinoa HOM05D001143 ORTHO05D001457 4.5e-09 64.3 53 54.7
Eucgr.F01505 Eucalyptus grandis HOM05D001143 ORTHO05D001457 4.5e-09 64.3 54 61.1
MD08G1038600 Malus domestica HOM05D001143 ORTHO05D001457 4.5e-09 64.3 54 55.6
Potri.014G038700 Populus trichocarpa HOM05D001143 ORTHO05D001457 4.5e-09 64.3 54 59.3
Thecc.08G019700 Theobroma cacao HOM05D001143 ORTHO05D001457 4.5e-09 64.3 54 55.6
CAN.G371.110 Capsicum annuum HOM05D001143 ORTHO05D001457 5.9e-09 63.9 45 64.4
Cfa011261 Carpinus fangiana HOM05D001143 ORTHO05D001457 5.9e-09 63.9 55 54.5
CsaV3_2G028330 Cucumis sativus L. HOM05D001143 ORTHO05D001457 5.9e-09 63.9 54 57.4
Duzib041G0214 Durio zibethinus HOM05D001143 ORTHO05D001457 5.9e-09 63.9 54 55.6
Lsat_1_v5_gn_4_122621 Lactuca sativa HOM05D001143 ORTHO05D001457 5.9e-09 63.9 54 55.6
Lj5g0027886 Lotus japonicus HOM05D001143 ORTHO05D001457 5.9e-09 63.9 54 59.3
Nitab4.5_0000110g0020 Nicotiana tabacum HOM05D001143 ORTHO05D001457 5.9e-09 63.9 45 66.7
Oeu009587.1 Olea europaea HOM05D001143 ORTHO05D001457 5.9e-09 63.9 54 55.6
MELO3C010910.2 Cucumis melo HOM05D001143 ORTHO05D001457 7.7e-09 63.5 54 55.6
MBI16_g29184_MAGBIO Magnolia biondii HOM05D001143 ORTHO05D001457 7.7e-09 63.5 56 53.6
QL02p007013 Quercus lobata HOM05D001143 ORTHO05D001457 7.7e-09 63.5 54 57.4
Rhsim06G0039400 Rhododendron simsii HOM05D001143 ORTHO05D001457 7.7e-09 63.5 48 60.4
Migut.C00664 Erythranthe guttata HOM05D001143 ORTHO05D001457 1.0e-08 63.2 56 51.8
Glyma.17G246500 Glycine max HOM05D001143 ORTHO05D001457 1.0e-08 63.2 48 62.5
Gohir.A06G013400 Gossypium hirsutum HOM05D001143 ORTHO05D001457 1.0e-08 63.2 54 57.4
Peaxi162Scf00115g00115 Petunia axillaris HOM05D001143 ORTHO05D001457 1.0e-08 63.2 45 64.4
Sabra14G0028100 Salix brachista HOM05D001143 ORTHO05D001457 1.0e-08 63.2 54 59.3
Solyc04g079730.1 Solanum lycopersicum HOM05D001143 ORTHO05D001457 1.0e-08 63.2 45 64.4
Sopen04g033310 Solanum pennellii HOM05D001143 ORTHO05D001457 1.0e-08 63.2 45 64.4
PGSC0003DMG400016887 Solanum tuberosum HOM05D001143 ORTHO05D001457 1.0e-08 63.2 45 64.4
MSTRG.24313 Avicennia marina HOM05D001143 ORTHO05D001457 1.3e-08 62.8 46 65.2
Hma1.2p1_0260F.1_g104430 Hydrangea macrophylla HOM05D001143 ORTHO05D001457 1.3e-08 62.8 48 62.5
Lalb_Chr23g0266751 Lupinus albus HOM05D001143 ORTHO05D001457 1.3e-08 62.8 54 55.6
VMungo1309G2555 Vigna mungo HOM05D001143 ORTHO05D001457 1.3e-08 62.8 48 54.2
Cfa018464 Carpinus fangiana HOM05D001143 ORTHO05D001457 1.7e-08 62.4 48 58.3
Haze_17602 Corylus avellana HOM05D001143 ORTHO05D001457 1.7e-08 62.4 48 58.3
Haze_17604 Corylus avellana HOM05D001143 ORTHO05D001457 1.7e-08 62.4 48 58.3
Gohir.D06G011000 Gossypium hirsutum HOM05D001143 ORTHO05D001457 1.7e-08 62.4 54 57.4
Gorai.010G013700 Gossypium raimondii HOM05D001143 ORTHO05D001457 1.7e-08 62.4 54 57.4
QL11p039446 Quercus lobata HOM05D001143 ORTHO05D001457 1.7e-08 62.4 78 42.3
Sed0019712 Sechium edule HOM05D001143 ORTHO05D001457 1.7e-08 62.4 54 53.7
PGSC0003DMG400001149 Solanum tuberosum HOM05D001143 ORTHO05D001457 1.7e-08 62.4 48 60.4
vmacro21594 Vaccinium macrocarpon HOM05D001143 ORTHO05D001457 1.7e-08 62.4 45 62.2
Ah.01g008990 Amaranthus hybridus HOM05D001143 ORTHO05D001457 2.2e-08 62.0 53 56.6
Ah.01g022690 Amaranthus hybridus HOM05D001143 ORTHO05D001457 2.2e-08 62.0 53 56.6
EL10Ac3g06219 Beta vulgaris HOM05D001143 ORTHO05D001457 2.2e-08 62.0 53 54.7
AUR62033870 Chenopodium quinoa HOM05D001143 ORTHO05D001457 2.2e-08 62.0 53 52.8
FvH4_2g40510 Fragaria vesca HOM05D001143 ORTHO05D001457 2.2e-08 62.0 48 58.3
FAN15G2724 Fragaria x ananassa HOM05D001143 ORTHO05D001457 2.2e-08 62.0 48 58.3
FAN27G2511 Fragaria x ananassa HOM05D001143 ORTHO05D001457 2.2e-08 62.0 48 58.3
Phvul.001G017800 Phaseolus vulgaris HOM05D001143 ORTHO05D001457 2.2e-08 62.0 48 58.3
arahy.Tifrunner.gnm1.ann1.VN8AVF Arachis hypogaea HOM05D001143 ORTHO05D001457 2.9e-08 61.6 54 51.9
Medtr1g021652 Medicago truncatula HOM05D001143 ORTHO05D001457 2.9e-08 61.6 46 60.9
Sed0006920 Sechium edule HOM05D001143 ORTHO05D001457 2.9e-08 61.6 54 53.7
VMungo0647G0511 Vigna mungo HOM05D001143 ORTHO05D001457 2.9e-08 61.6 48 60.4
Nitab4.5_0004479g0070 Nicotiana tabacum HOM05D001143 ORTHO05D001457 3.8e-08 61.2 36 75.0
Psat0s3268g0280 Pisum sativum HOM05D001143 ORTHO05D001457 3.8e-08 61.2 54 53.7
Psat1g093440 Pisum sativum HOM05D001143 ORTHO05D001457 3.8e-08 61.2 54 53.7
QL11p039533 Quercus lobata HOM05D001143 ORTHO05D001457 3.8e-08 61.2 78 42.3
GSVIVG01009616001 Vitis vinifera HOM05D001143 ORTHO05D001457 3.8e-08 61.2 47 57.4
MSTRG.25130 Avicennia marina HOM05D001143 ORTHO05D001457 5.0e-08 60.8 54 53.7
CiPaw.15G068900 Carya illinoinensis HOM05D001143 ORTHO05D001457 5.0e-08 60.8 48 56.2
Glyma.14G078600 Glycine max HOM05D001143 ORTHO05D001457 5.0e-08 60.8 48 58.3
Lj4A782T77 Lonicera japonica HOM05D001143 ORTHO05D001457 5.0e-08 60.8 46 58.7
Nn5g29427 Nelumbo nucifera HOM05D001143 ORTHO05D001457 5.0e-08 60.8 56 53.6
Nn5g29428 Nelumbo nucifera HOM05D001143 ORTHO05D001457 5.0e-08 60.8 56 53.6
Nitab4.5_0004126g0030 Nicotiana tabacum HOM05D001143 ORTHO05D001457 5.0e-08 60.8 36 75.0
Glyma.04G035000 Glycine max HOM05D001143 ORTHO05D001457 6.5e-08 60.5 48 54.2
Lalb_Chr08g0245751 Lupinus albus HOM05D001143 ORTHO05D001457 6.5e-08 60.5 54 55.6
TPR.G12391 Trifolium pratense HOM05D001143 ORTHO05D001457 6.5e-08 60.5 54 50.0
MBI05_g36571_MAGBIO Magnolia biondii HOM05D001143 ORTHO05D001457 8.5e-08 60.1 56 53.6
Os03g0767000 Oryza sativa ssp. japonica HOM05D001143 ORTHO05D001457 8.5e-08 60.1 34 76.5
PSO700G0132 Papaver somniferum HOM05D001143 ORTHO05D001457 8.5e-08 60.1 54 53.7
Manes.05G166200 Manihot esculenta HOM05D001143 ORTHO05D001457 1.1e-07 59.7 48 54.2
Manes.05G166301 Manihot esculenta HOM05D001143 ORTHO05D001457 1.1e-07 59.7 48 54.2
Medtr3g111530 Medicago truncatula HOM05D001143 ORTHO05D001457 1.1e-07 59.7 54 51.9
SHI08190 Sapria himalayana HOM05D001143 ORTHO05D001457 1.1e-07 59.7 48 58.3
SGA_v2.0_scaffold33G13549 Striga asiatica HOM05D001143 ORTHO05D001457 1.1e-07 59.7 47 59.6
CAN.G309.21 Capsicum annuum HOM05D001143 ORTHO05D001457 1.5e-07 59.3 53 56.6
Gohir.D06G010800 Gossypium hirsutum HOM05D001143 ORTHO05D001457 1.5e-07 59.3 54 55.6
Lalb_Chr14g0368961 Lupinus albus HOM05D001143 ORTHO05D001457 1.5e-07 59.3 48 56.2
Manes.18G031800 Manihot esculenta HOM05D001143 ORTHO05D001457 1.5e-07 59.3 54 53.7
Manes.18G031933 Manihot esculenta HOM05D001143 ORTHO05D001457 1.5e-07 59.3 54 53.7
Sc15g0006670 Simmondsia chinensis HOM05D001143 ORTHO05D001457 1.5e-07 59.3 45 60.0
ATR0733G240 Amborella trichopoda HOM05D001143 ORTHO05D001457 1.9e-07 58.9 54 53.7
Lj4P781T76 Lonicera japonica HOM05D001143 ORTHO05D001457 1.9e-07 58.9 45 62.2
Psat0s2724g0160 Pisum sativum HOM05D001143 ORTHO05D001457 1.9e-07 58.9 54 51.9
MSTRG.22281 Avicennia marina HOM05D001143 ORTHO05D001457 2.5e-07 58.5 45 62.2
SEGI_06161 Sequoiadendron giganteum HOM05D001143 ORTHO05D001457 2.5e-07 58.5 46 58.7
SEGI_26627 Sequoiadendron giganteum HOM05D001143 ORTHO05D001457 2.5e-07 58.5 46 58.7
Zm00001eb214000 Zea mays HOM05D001143 ORTHO05D001457 2.5e-07 58.5 34 73.5
Cc10_g03570 Coffea canephora HOM05D001143 ORTHO05D001457 3.2e-07 58.2 54 50.0
Phvul.009G061325 Phaseolus vulgaris HOM05D001143 ORTHO05D001457 4.2e-07 57.8 54 51.9
vmacro04482 Vaccinium macrocarpon HOM05D001143 ORTHO05D001457 4.2e-07 57.8 35 74.3
Ca_15533_v3 Cicer arietinum L. HOM05D001143 ORTHO05D001457 5.5e-07 57.4 54 51.9
Lj1g0006570 Lotus japonicus HOM05D001143 ORTHO05D001457 5.5e-07 57.4 54 51.9
SEGI_40380 Sequoiadendron giganteum HOM05D001143 ORTHO05D001457 5.5e-07 57.4 46 56.5
arahy.Tifrunner.gnm1.ann1.B9A644 Arachis hypogaea HOM05D001143 ORTHO05D001457 7.2e-07 57.0 48 54.2
arahy.Tifrunner.gnm1.ann1.I2ECPT Arachis hypogaea HOM05D001143 ORTHO05D001457 7.2e-07 57.0 48 54.2
PSO210G4521 Papaver somniferum HOM05D001143 ORTHO05D001457 7.2e-07 57.0 46 56.5
PSO675G0352 Papaver somniferum HOM05D001143 ORTHO05D001457 7.2e-07 57.0 48 52.1
Migut.N02681 Erythranthe guttata HOM05D001143 ORTHO05D001457 9.4e-07 56.6 46 58.7
Zm00001eb058670 Zea mays HOM05D001143 ORTHO05D001457 1.2e-06 56.2 60 46.7
Cfa017762 Carpinus fangiana HOM05D001143 ORTHO05D000143 2.7e-06 55.1 36 66.7
PSO541G0480 Papaver somniferum HOM05D001143 ORTHO05D007333 2.7e-06 55.1 46 52.2
CiPaw.16G052300 Carya illinoinensis HOM05D001143 ORTHO05D001457 4.7e-06 54.3 47 55.3
PSO675G6064 Papaver somniferum HOM05D001143 ORTHO05D001457 4.7e-06 54.3 46 52.2
Zm00001eb058640 Zea mays HOM05D001143 ORTHO05D001457 4.7e-06 54.3 60 43.3
AagrBONN_evm.TU.Sc2ySwM_344.1278 Anthoceros agrestis HOM05D001143 ORTHO05D001457 6.1e-06 53.9 45 57.8
FvH4_2g07423 Fragaria vesca HOM05D001143 ORTHO05D001457 6.1e-06 53.9 56 50.0
FAN24G3465 Fragaria x ananassa HOM05D001143 ORTHO05D001457 6.1e-06 53.9 56 50.0
PGR102G1881 Punica granatum HOM05D001143 ORTHO05D001457 6.1e-06 53.9 48 52.1
RcHm_v2.0_Chr6g0261011 Rosa chinensis HOM05D001143 ORTHO05D001457 6.1e-06 53.9 46 54.3
Os03g0225900 Oryza sativa ssp. japonica HOM05D001143 ORTHO05D001457 8.0e-06 53.5 36 63.9
SEGI_37367 Sequoiadendron giganteum HOM05D001143 ORTHO05D001457 8.0e-06 53.5 54 53.7


User provided reference genes

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