Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G10940 Aethionema arabicum HOM05D000234 ORTHO05D000335 2.0e-86 322.4 161 100.0
Aa31LG7G10910 Aethionema arabicum HOM05D000234 ORTHO05D000335 2.8e-24 115.9 76 76.3
Thhalv10006643m.g Eutrema salsugineum HOM05D000234 ORTHO05D000335 1.0e-21 107.5 179 42.5
Sp1g27100 Schrenkiella parvula HOM05D000234 ORTHO05D000335 1.7e-21 106.7 179 40.8
AL1G49770 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 3.8e-21 105.5 179 41.3
AT1G31280 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 3.8e-21 105.5 179 41.3
CARHR030750 Cardamine hirsuta HOM05D000234 ORTHO05D000335 3.8e-21 105.5 179 40.8
BcaC06g35332 Brassica carinata HOM05D000234 ORTHO05D000335 5.0e-21 105.1 179 41.9
A09p34960 Brassica napus HOM05D000234 ORTHO05D000335 5.0e-21 105.1 179 41.9
C05p30470 Brassica napus HOM05D000234 ORTHO05D000335 5.0e-21 105.1 179 41.9
BraA09t39027Z Brassica rapa HOM05D000234 ORTHO05D000335 5.0e-21 105.1 179 41.9
Aa31LG2G14600 Aethionema arabicum HOM05D000234 ORTHO05D000335 2.5e-20 102.8 180 41.1
BcaB07g32789 Brassica carinata HOM05D000234 ORTHO05D000335 7.2e-20 101.3 179 41.3
THA.LOC104798616 Tarenaya hassleriana HOM05D000234 ORTHO05D000335 2.7e-19 99.4 179 40.8
Aa31LG7G10930 Aethionema arabicum HOM05D000234 ORTHO05D000335 4.7e-19 98.6 67 74.6
Carub.0001s2971 Capsella rubella HOM05D000234 ORTHO05D000335 1.0e-18 97.4 180 40.6
Sp1g27110 Schrenkiella parvula HOM05D000234 ORTHO05D000335 3.0e-18 95.9 174 42.5
BcaC08g44027 Brassica carinata HOM05D000234 ORTHO05D000335 3.9e-18 95.5 180 39.4
C06p14370 Brassica napus HOM05D000234 ORTHO05D000335 3.9e-18 95.5 180 39.4
BolC6t36616H Brassica oleracea HOM05D000234 ORTHO05D000335 3.9e-18 95.5 180 39.4
BcaB02g10962 Brassica carinata HOM05D000234 ORTHO05D000335 5.1e-18 95.1 180 40.0
A05p18710 Brassica napus HOM05D000234 ORTHO05D000335 1.1e-17 94.0 180 38.9
BraA05t20765Z Brassica rapa HOM05D000234 ORTHO05D000335 1.1e-17 94.0 180 38.9
Carub.0001s2972 Capsella rubella HOM05D000234 ORTHO05D000335 4.4e-17 92.0 189 37.6
Migut.M01964 Erythranthe guttata HOM05D000234 ORTHO05D000335 4.4e-17 92.0 188 38.8
Cfa000905 Carpinus fangiana HOM05D000234 ORTHO05D000335 4.8e-16 88.6 188 37.2
Haze_05654 Corylus avellana HOM05D000234 ORTHO05D000335 6.3e-16 88.2 188 37.8
AT1G31290 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 1.1e-15 87.4 180 37.8
Cpa.g.sc135.40 Carica papaya HOM05D000234 ORTHO05D000335 1.1e-15 87.4 180 36.7
Psat1g169880 Pisum sativum HOM05D000234 ORTHO05D000335 1.1e-15 87.4 179 38.0
arahy.Tifrunner.gnm1.ann1.M7MYIY Arachis hypogaea HOM05D000234 ORTHO05D000335 1.4e-15 87.0 179 37.4
Glyma.20G022900 Glycine max HOM05D000234 ORTHO05D000335 1.4e-15 87.0 179 38.0
Potri.012G118700 Populus trichocarpa HOM05D000234 ORTHO05D000335 1.4e-15 87.0 179 38.5
TAR626G0519 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.4e-15 87.0 190 35.8
Ca_11351_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 3.1e-15 85.9 179 37.4
Gohir.D06G147400 Gossypium hirsutum HOM05D000234 ORTHO05D000335 3.1e-15 85.9 179 38.5
TPR.G17524 Trifolium pratense HOM05D000234 ORTHO05D000335 3.1e-15 85.9 179 37.4
Cc09_g06770 Coffea canephora HOM05D000234 ORTHO05D000335 4.1e-15 85.5 179 36.9
AL1G49760 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 5.3e-15 85.1 180 37.8
Sabra12G0089900 Salix brachista HOM05D000234 ORTHO05D000335 5.3e-15 85.1 179 36.9
Aa31LG7G10900 Aethionema arabicum HOM05D000234 ORTHO05D000335 6.9e-15 84.7 46 87.0
CiPaw.09G079500 Carya illinoinensis HOM05D000234 ORTHO05D000335 6.9e-15 84.7 179 37.4
Duzib235G1469 Durio zibethinus HOM05D000234 ORTHO05D000335 6.9e-15 84.7 179 36.9
Gorai.010G171800 Gossypium raimondii HOM05D000234 ORTHO05D000335 6.9e-15 84.7 179 38.0
SalBow8G5357 Salvia bowleyana HOM05D000234 ORTHO05D000335 6.9e-15 84.7 179 38.0
CiPaw.10G066000 Carya illinoinensis HOM05D000234 ORTHO05D000335 1.5e-14 83.6 190 36.3
Medtr2g028910 Medicago truncatula HOM05D000234 ORTHO05D000335 1.5e-14 83.6 179 36.9
Gohir.A06G140700 Gossypium hirsutum HOM05D000234 ORTHO05D000335 2.0e-14 83.2 179 38.0
Phvul.006G131700 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 2.0e-14 83.2 191 34.6
Aqoxy1G01496 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 2.6e-14 82.8 179 37.4
Glyma.15G126700 Glycine max HOM05D000234 ORTHO05D000335 2.6e-14 82.8 179 36.9
QL07p030475 Quercus lobata HOM05D000234 ORTHO05D000335 2.6e-14 82.8 179 36.9
Ciclev10014144m.g Citrus clementina HOM05D000234 ORTHO05D000335 3.4e-14 82.4 179 35.8
Cc09_g06780 Coffea canephora HOM05D000234 ORTHO05D000335 3.4e-14 82.4 189 34.4
SalBow8G0274 Salvia bowleyana HOM05D000234 ORTHO05D000335 3.4e-14 82.4 179 35.8
VMungo0540G0788 Vigna mungo HOM05D000234 ORTHO05D000335 3.4e-14 82.4 191 35.1
QL07p031563 Quercus lobata HOM05D000234 ORTHO05D000335 5.9e-14 81.6 179 35.8
Haze_05576 Corylus avellana HOM05D000234 ORTHO05D000335 7.7e-14 81.3 190 35.8
QL07p032335 Quercus lobata HOM05D000234 ORTHO05D000335 7.7e-14 81.3 180 36.1
Medtr4g083610 Medicago truncatula HOM05D000234 ORTHO05D000335 1.0e-13 80.9 179 35.2
Actinidia22377 Actinidia chinensis HOM05D000234 ORTHO05D000335 1.3e-13 80.5 179 35.2
Eucgr.D00109 Eucalyptus grandis HOM05D000234 ORTHO05D000335 1.3e-13 80.5 193 32.1
Manes.16G048683 Manihot esculenta HOM05D000234 ORTHO05D000335 1.3e-13 80.5 179 35.2
vmacro06213 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 1.3e-13 80.5 179 34.1
Lsat_1_v5_gn_4_22040 Lactuca sativa HOM05D000234 ORTHO05D000335 1.7e-13 80.1 178 36.0
Lj6g0020367 Lotus japonicus HOM05D000234 ORTHO05D000335 1.7e-13 80.1 179 35.8
Lalb_Chr15g0088591 Lupinus albus HOM05D000234 ORTHO05D000335 1.7e-13 80.1 179 33.0
CSS0022104 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 2.2e-13 79.7 179 35.8
Cfa000958 Carpinus fangiana HOM05D000234 ORTHO05D000335 2.2e-13 79.7 190 35.3
Dinv11861 Davidia involucrata HOM05D000234 ORTHO05D000335 2.2e-13 79.7 179 34.6
Eucgr.D00105 Eucalyptus grandis HOM05D000234 ORTHO05D000335 2.2e-13 79.7 193 33.2
Lalb_Chr09g0328791 Lupinus albus HOM05D000234 ORTHO05D000335 2.9e-13 79.3 188 33.5
MSTRG.7582 Avicennia marina HOM05D000234 ORTHO05D000335 3.8e-13 79.0 179 34.6
CSS0034580 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 3.8e-13 79.0 179 35.2
DCAR_004316 Daucus carota HOM05D000234 ORTHO05D000335 3.8e-13 79.0 190 33.7
Duzib192G0161 Durio zibethinus HOM05D000234 ORTHO05D000335 3.8e-13 79.0 179 35.8
Migut.M01963 Erythranthe guttata HOM05D000234 ORTHO05D000335 3.8e-13 79.0 179 35.8
Rhsim03G0243400 Rhododendron simsii HOM05D000234 ORTHO05D000335 3.8e-13 79.0 179 34.6
Thecc.06G137600 Theobroma cacao HOM05D000234 ORTHO05D000335 3.8e-13 79.0 190 35.8
TPR.G34036 Trifolium pratense HOM05D000234 ORTHO05D000335 3.8e-13 79.0 179 34.6
Ciclev10014153m.g Citrus clementina HOM05D000234 ORTHO05D000335 5.0e-13 78.6 179 35.2
Eucgr.D01097 Eucalyptus grandis HOM05D000234 ORTHO05D000335 5.0e-13 78.6 189 34.4
PGSC0003DMG400021211 Solanum tuberosum HOM05D000234 ORTHO05D000335 5.0e-13 78.6 178 34.3
PGSC0003DMG400021212 Solanum tuberosum HOM05D000234 ORTHO05D000335 5.0e-13 78.6 191 33.0
TWI38G0717 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 5.0e-13 78.6 179 32.4
VMungo0251G2680 Vigna mungo HOM05D000234 ORTHO05D000335 5.0e-13 78.6 191 34.6
CSS0024752 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 6.5e-13 78.2 179 35.8
CSS0034476 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 6.5e-13 78.2 179 35.8
Sabra15G0135600 Salix brachista HOM05D000234 ORTHO05D000335 6.5e-13 78.2 188 34.0
Sopen02g018440 Solanum pennellii HOM05D000234 ORTHO05D000335 6.5e-13 78.2 179 34.1
Thecc.06G137400 Theobroma cacao HOM05D000234 ORTHO05D000335 6.5e-13 78.2 190 35.3
TWI63G0586 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 6.5e-13 78.2 179 35.8
Solyc02g069280.2 Solanum lycopersicum HOM05D000234 ORTHO05D000335 8.5e-13 77.8 179 34.1
vmacro06211 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 8.5e-13 77.8 179 34.6
Actinidia35150 Actinidia chinensis HOM05D000234 ORTHO05D000335 1.1e-12 77.4 179 35.8
C07p17300 Brassica napus HOM05D000234 ORTHO05D000335 1.1e-12 77.4 85 54.1
MD05G1256100 Malus domestica HOM05D000234 ORTHO05D000335 1.1e-12 77.4 190 34.2
Potri.015G117350 Populus trichocarpa HOM05D000234 ORTHO05D000335 1.1e-12 77.4 179 35.8
PGR083G1759 Punica granatum HOM05D000234 ORTHO05D000335 1.1e-12 77.4 179 35.8
Eucgr.D00106 Eucalyptus grandis HOM05D000234 ORTHO05D000335 1.4e-12 77.0 191 33.5
Phvul.002G100100 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 1.4e-12 77.0 191 33.5
Atru.chr10.596 Acer truncatum HOM05D000234 ORTHO05D000335 1.9e-12 76.6 191 35.1
Oeu008718.1 Olea europaea HOM05D000234 ORTHO05D000335 1.9e-12 76.6 179 35.2
CSS0023206 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 2.5e-12 76.3 179 34.6
Dinv11858 Davidia involucrata HOM05D000234 ORTHO05D000335 2.5e-12 76.3 179 35.2
MD10G1236300 Malus domestica HOM05D000234 ORTHO05D000335 2.5e-12 76.3 190 34.2
Thecc.06G138000 Theobroma cacao HOM05D000234 ORTHO05D000335 2.5e-12 76.3 179 35.8
vmacro03499 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 3.2e-12 75.9 179 35.2
DCAR_007791 Daucus carota HOM05D000234 ORTHO05D000335 4.2e-12 75.5 179 34.1
Lsat_1_v5_gn_4_22000 Lactuca sativa HOM05D000234 ORTHO05D000335 4.2e-12 75.5 179 35.2
TAR624G0568 Trochodendron aralioides HOM05D000234 ORTHO05D000335 4.2e-12 75.5 179 31.8
ECA234G4015 Erigeron canadensis HOM05D000234 ORTHO05D000335 5.5e-12 75.1 177 33.3
Manes.07G023100 Manihot esculenta HOM05D000234 ORTHO05D000335 5.5e-12 75.1 187 34.2
Rhsim03G0243200 Rhododendron simsii HOM05D000234 ORTHO05D000335 5.5e-12 75.1 179 33.5
GSVIVG01026268001 Vitis vinifera HOM05D000234 ORTHO05D000335 5.5e-12 75.1 193 34.2
Dinv11860 Davidia involucrata HOM05D000234 ORTHO05D000335 7.2e-12 74.7 180 35.0
MD10G1236400 Malus domestica HOM05D000234 ORTHO05D000335 7.2e-12 74.7 190 35.3
Hund06836 Selenicereus undatus HOM05D000234 ORTHO05D000335 7.2e-12 74.7 178 34.8
Prupe.4G108000 Prunus persica HOM05D000234 ORTHO05D000335 9.4e-12 74.3 179 35.8
vmacro06212 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 9.4e-12 74.3 179 34.1
EL10Ac4g08821 Beta vulgaris HOM05D000234 ORTHO05D000335 1.2e-11 73.9 179 35.2
Rhsim03G0243300 Rhododendron simsii HOM05D000234 ORTHO05D000335 1.2e-11 73.9 179 33.5
CSS0002628 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.6e-11 73.6 179 33.5
Ca_18779_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 2.1e-11 73.2 179 34.1
SGA_v2.0_scaffold535G52768 Striga asiatica HOM05D000234 ORTHO05D000335 2.1e-11 73.2 190 34.2
arahy.Tifrunner.gnm1.ann1.MFKE4U Arachis hypogaea HOM05D000234 ORTHO05D000335 2.7e-11 72.8 192 32.8
Lj1C1142T12 Lonicera japonica HOM05D000234 ORTHO05D000335 2.7e-11 72.8 181 33.7
Prupe.4G108100 Prunus persica HOM05D000234 ORTHO05D000335 2.7e-11 72.8 179 35.8
Solyc02g069270.2 Solanum lycopersicum HOM05D000234 ORTHO05D000335 2.7e-11 72.8 189 32.3
Sopen02g018430 Solanum pennellii HOM05D000234 ORTHO05D000335 2.7e-11 72.8 189 32.3
Lj4g0004639 Lotus japonicus HOM05D000234 ORTHO05D000335 3.6e-11 72.4 179 33.5
RcHm_v2.0_Chr5g0019581 Rosa chinensis HOM05D000234 ORTHO05D000335 3.6e-11 72.4 188 34.6
arahy.Tifrunner.gnm1.ann1.B23GPN Arachis hypogaea HOM05D000234 ORTHO05D000335 6.1e-11 71.6 192 32.3
Nitab4.5_0002574g0060 Nicotiana tabacum HOM05D000234 ORTHO05D000335 6.1e-11 71.6 187 34.2
Oeu045613.1 Olea europaea HOM05D000234 ORTHO05D000335 6.1e-11 71.6 179 33.0
Psat7g132600 Pisum sativum HOM05D000234 ORTHO05D000335 8.0e-11 71.2 179 33.0
Zm00001eb070760 Zea mays HOM05D000234 ORTHO05D000335 8.0e-11 71.2 177 33.9
CSS0009802 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.0e-10 70.9 166 34.9
Peaxi162Scf00623g00518 Petunia axillaris HOM05D000234 ORTHO05D000335 1.0e-10 70.9 187 33.7
TWI63G1642 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 1.0e-10 70.9 188 35.1
FvH4_3g11980 Fragaria vesca HOM05D000234 ORTHO05D000335 1.4e-10 70.5 190 34.2
FAN21G3804 Fragaria x ananassa HOM05D000234 ORTHO05D000335 1.4e-10 70.5 190 34.2
CAN.G1202.12 Capsicum annuum HOM05D000234 ORTHO05D000335 1.8e-10 70.1 180 34.4
Rhsim13G0129900 Rhododendron simsii HOM05D000234 ORTHO05D000335 1.8e-10 70.1 179 31.3
Sc06g0002930 Simmondsia chinensis HOM05D000234 ORTHO05D000335 1.8e-10 70.1 181 32.6
Solyc02g069260.3 Solanum lycopersicum HOM05D000234 ORTHO05D000335 1.8e-10 70.1 189 33.3
Nitab4.5_0005030g0010 Nicotiana tabacum HOM05D000234 ORTHO05D000335 2.3e-10 69.7 187 33.7
PGSC0003DMG400021213 Solanum tuberosum HOM05D000234 ORTHO05D000335 2.3e-10 69.7 189 33.9
Hma1.2p1_0065F.1_g035330 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 3.0e-10 69.3 179 33.0
Sc06g0002910 Simmondsia chinensis HOM05D000234 ORTHO05D000335 3.0e-10 69.3 181 33.1
FAN16G2044 Fragaria x ananassa HOM05D000234 ORTHO05D000335 3.9e-10 68.9 190 33.2
HanXRQChr16g0528211 Helianthus annuus HOM05D000234 ORTHO05D000335 5.2e-10 68.6 175 33.1
Hma1.2p1_0092F.1_g046850 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 5.2e-10 68.6 178 32.0
Duzib235G0982 Durio zibethinus HOM05D000234 ORTHO05D000335 6.7e-10 68.2 186 31.7
Lj8A254T78 Lonicera japonica HOM05D000234 ORTHO05D000335 8.8e-10 67.8 154 35.7
AUR62041289 Chenopodium quinoa HOM05D000234 ORTHO05D000335 1.1e-09 67.4 179 34.1
HanXRQChr16g0528251 Helianthus annuus HOM05D000234 ORTHO05D000335 1.1e-09 67.4 175 31.4
Hma1.2p1_0065F.1_g035340 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 1.5e-09 67.0 179 33.5
Dinv01302 Davidia involucrata HOM05D000234 ORTHO05D000335 2.0e-09 66.6 178 32.0
Sopen02g018420 Solanum pennellii HOM05D000234 ORTHO05D000335 2.0e-09 66.6 189 32.8
GSVIVG01026264001 Vitis vinifera HOM05D000234 ORTHO05D000335 2.0e-09 66.6 176 35.8
Actinidia35148 Actinidia chinensis HOM05D000234 ORTHO05D000335 3.3e-09 65.9 179 33.5
GSVIVG01026261001 Vitis vinifera HOM05D000234 ORTHO05D000335 3.3e-09 65.9 187 33.7
Zm00001eb430920 Zea mays HOM05D000234 ORTHO05D000335 4.4e-09 65.5 177 33.3
Os04g0615700 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 5.7e-09 65.1 177 33.3
COL.COLO4_20190 Corchorus olitorius HOM05D000234 ORTHO05D000335 7.4e-09 64.7 75 48.0
CANSAT35G0458 Cannabis sativa HOM05D000234 ORTHO05D000335 9.7e-09 64.3 178 34.3
Lj2A346T40 Lonicera japonica HOM05D000234 ORTHO05D000335 2.8e-08 62.8 178 29.2
Lj2A354G50 Lonicera japonica HOM05D000234 ORTHO05D000335 8.2e-08 61.2 177 28.8
AUR62034122 Chenopodium quinoa HOM05D000234 ORTHO05D000335 1.1e-07 60.8 179 33.0
Os04g0615800 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 1.1e-07 60.8 197 32.5
Nn7g38057 Nelumbo nucifera HOM05D000234 ORTHO05D000335 5.3e-07 58.5 75 45.3
Lj2A346T39 Lonicera japonica HOM05D000234 ORTHO05D000335 7.0e-07 58.2 177 29.4
QL07p032350 Quercus lobata HOM05D000234 ORTHO05D000335 1.6e-06 57.0 75 44.0
AagrBONN_evm.TU.Sc2ySwM_344.5161 Anthoceros agrestis HOM05D000234 ORTHO05D000335 2.0e-06 56.6 146 35.6
AUR62042863 Chenopodium quinoa HOM05D000234 ORTHO05D000335 2.0e-06 56.6 177 31.1
HPP92_013413 Vanilla planifolia HOM05D000234 ORTHO05D000335 3.5e-06 55.8 144 31.2


User provided reference genes

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