Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 0.0e+00 1242.6 642 100.0
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 5.7e-286 987.3 654 78.4
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 2.7e-280 968.4 651 77.7
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 5.2e-279 964.1 653 76.9
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 5.0e-274 947.6 650 75.7
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 6.3e-269 930.6 648 75.2
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 7.0e-268 927.2 648 75.0
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 7.0e-268 927.2 648 75.0
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 8.9e-263 910.2 652 74.1
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 8.9e-263 910.2 652 74.1
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 2.2e-261 905.6 650 73.1
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.0e-258 896.7 650 73.5
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 4.3e-257 891.3 650 72.9
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.2e-253 879.0 648 70.5
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 7.3e-233 810.8 656 63.7
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.6e-232 808.5 647 64.5
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 4.9e-229 798.1 645 63.3
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 4.2e-228 795.0 652 62.6
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 2.1e-227 792.7 650 62.2
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.0e-226 790.4 650 62.9
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 6.6e-226 787.7 653 62.2
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.6e-226 787.7 652 63.3
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.1e-225 786.9 651 61.1
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.5e-225 786.6 648 63.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.9e-225 786.2 649 62.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.8e-224 782.3 648 61.7
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 3.1e-223 778.9 649 62.1
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.5e-222 776.5 646 61.6
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.6e-222 775.8 648 61.0
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 4.9e-221 771.5 648 60.8
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.4e-220 770.0 654 61.5
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.1e-219 766.1 648 61.0
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.7e-219 765.8 651 60.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.6e-219 765.0 654 60.1
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.3e-218 763.5 648 60.2
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.1e-217 760.4 644 60.1
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 1.9e-217 759.6 649 61.5
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 2.5e-217 759.2 644 61.0
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 9.6e-217 757.3 655 60.3
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.1e-216 756.1 652 58.7
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.6e-216 755.4 644 60.7
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.4e-215 753.4 651 59.6
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 6.9e-215 751.1 651 59.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 6.9e-215 751.1 657 60.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 3.4e-214 748.8 650 59.5
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.5e-214 748.4 651 59.3
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 5.8e-214 748.0 644 59.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 7.6e-214 747.7 645 59.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.7e-213 746.5 644 59.8
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.7e-213 746.5 653 59.0
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.9e-213 745.7 650 59.5
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 3.8e-213 745.3 650 60.3
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.4e-213 744.2 648 58.2
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.4e-212 743.4 645 60.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.2e-212 742.3 647 60.1
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 5.5e-212 741.5 651 57.9
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.6e-211 740.0 653 59.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 1.8e-210 736.5 646 59.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 5.1e-210 734.9 649 58.6
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.5e-209 733.4 651 57.6
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.9e-209 733.0 641 57.6
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 7.4e-209 731.1 650 58.3
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 7.4e-209 731.1 650 58.8
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 9.6e-209 730.7 653 58.3
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 4.8e-208 728.4 650 57.1
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 3.1e-207 725.7 656 57.9
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.0e-207 725.3 622 59.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 1.2e-206 723.8 647 58.4
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.4e-206 722.2 642 58.6
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 4.5e-206 721.8 648 57.6
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 7.6e-206 721.1 651 56.7
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.5e-205 718.0 624 59.9
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.1e-204 717.2 650 57.8
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-204 716.8 651 55.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 7.1e-204 714.5 652 58.0
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 6.0e-203 711.4 672 56.1
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 3.0e-202 709.1 649 57.2
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 5.1e-202 708.4 667 56.1
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 3.3e-201 705.7 648 55.6
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 5.7e-201 704.9 652 57.5
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 5.7e-201 704.9 652 57.7
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 1.3e-200 703.7 641 58.0
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.1e-200 703.0 654 56.3
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 3.8e-197 692.2 642 56.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.7e-195 686.0 647 55.5
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 2.7e-195 686.0 652 55.5
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 7.4e-193 677.9 655 55.9
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.5e-188 662.9 655 53.6
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 2.1e-187 659.8 647 53.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.1e-185 654.1 645 55.3
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.0e-185 653.3 658 53.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 2.8e-184 649.4 636 55.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 8.2e-184 647.9 684 50.6
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 8.8e-178 627.9 647 53.2
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 3.5e-174 615.9 651 51.5
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.5e-172 610.5 660 49.8
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 8.0e-171 604.7 660 50.8
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 7.5e-169 598.2 414 75.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 6.1e-163 578.6 510 59.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.5e-157 558.5 484 59.3
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.9e-132 477.2 525 48.2
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 2.8e-123 446.8 362 64.9
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.7e-123 446.0 358 63.1
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 6.2e-123 445.7 659 39.2
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 8.1e-123 445.3 488 51.2
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.3e-120 438.0 615 45.0
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 6.4e-104 382.5 646 36.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.5e-97 361.3 650 35.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.9e-86 322.4 500 40.0
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 7.4e-84 315.8 360 47.5
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.7e-75 288.1 763 29.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.8e-75 287.3 269 54.6
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.4e-74 285.0 278 50.7
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 3.6e-70 270.4 701 29.4
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 8.2e-59 232.6 354 38.4
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.7e-49 201.1 269 44.6
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 4.5e-49 200.3 270 42.2
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-43 181.8 217 45.2
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 4.7e-30 137.1 81 74.1
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-28 132.5 129 52.7
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.7e-24 118.6 207 36.2
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.6e-22 112.1 102 57.8
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 2.8e-22 111.3 229 34.1
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.6e-22 110.9 99 55.6
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.0e-20 105.1 101 46.5
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.0e-20 105.1 62 85.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 9.8e-20 102.8 78 61.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 2.2e-19 101.7 206 35.4
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 6.4e-19 100.1 73 63.0
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.1e-17 95.1 247 30.8
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.5e-17 94.4 86 45.3
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.0e-16 92.8 108 44.4
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 3.3e-15 87.8 97 44.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.1e-10 72.8 65 58.5
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-08 65.9 73 42.5


User provided reference genes

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