Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 6.9e-215 750.4 379 100.0
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 4.4e-145 518.5 377 71.1
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 9.9e-145 517.3 375 71.5
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 3.8e-144 515.4 376 72.1
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 8.4e-144 514.2 376 71.0
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 3.5e-142 508.8 375 70.1
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 3.5e-142 508.8 378 69.8
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 7.6e-137 491.1 371 68.7
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 4.9e-136 488.4 372 67.5
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 1.1e-135 487.3 371 68.2
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 5.4e-135 485.0 372 67.7
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 5.4e-135 485.0 372 67.7
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 7.1e-135 484.6 371 67.9
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 2.3e-117 426.4 364 62.6
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.9e-108 396.7 316 63.6
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 2.2e-107 393.3 366 57.9
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 3.7e-107 392.5 368 56.8
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 1.1e-106 391.0 327 60.9
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 1.8e-106 390.2 325 60.9
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.2e-105 387.5 350 57.7
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 3.4e-105 386.0 380 53.7
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 4.5e-105 385.6 360 56.1
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 1.4e-103 380.6 365 54.8
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.9e-103 380.2 374 55.6
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 3.2e-103 379.4 364 55.5
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 4.2e-103 379.0 371 55.3
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 9.3e-103 377.9 368 55.7
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 1.2e-102 377.5 349 56.7
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 2.1e-102 376.7 316 59.8
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 2.1e-102 376.7 325 59.4
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 6.1e-102 375.2 344 56.1
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 6.1e-102 375.2 315 61.0
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 6.1e-102 375.2 325 59.1
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 2.3e-101 373.2 365 55.6
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 8.8e-101 371.3 377 53.6
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.5e-100 370.5 325 58.8
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 2.5e-100 369.8 363 53.2
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.3e-100 369.4 363 54.3
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 2.2e-99 366.7 367 55.3
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.8e-99 366.3 313 58.8
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 2.8e-99 366.3 351 56.4
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 4.8e-99 365.5 316 57.9
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 6.3e-99 365.2 331 57.1
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 1.1e-98 364.4 356 53.7
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.4e-98 364.0 332 57.2
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 5.3e-98 362.1 363 52.1
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 6.9e-98 361.7 313 58.5
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.2e-97 360.9 332 56.9
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 3.4e-97 359.4 343 56.0
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 4.5e-97 359.0 362 52.8
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 3.8e-96 355.9 362 52.2
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 6.5e-96 355.1 362 52.5
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 4.2e-95 352.4 306 58.5
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.2e-95 352.4 330 55.2
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 3.6e-94 349.4 336 55.4
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 6.1e-94 348.6 346 55.5
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.4e-93 347.4 331 54.7
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 1.4e-93 347.4 317 58.0
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 1.8e-93 347.1 313 56.2
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 1.1e-92 344.4 336 53.6
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 4.4e-92 342.4 306 56.5
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 9.7e-92 341.3 313 55.9
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 9.7e-92 341.3 341 54.8
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 1.7e-91 340.5 324 54.0
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 1.7e-91 340.5 306 56.2
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 2.8e-91 339.7 306 57.5
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 3.7e-91 339.3 307 57.3
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 4.8e-91 339.0 322 54.0
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.8e-90 337.0 374 52.1
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.8e-90 337.0 347 53.3
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 5.3e-90 335.5 390 46.2
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 5.3e-90 335.5 307 56.4
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 5.3e-90 335.5 312 55.4
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 4.5e-89 332.4 381 47.8
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 1.0e-88 331.3 341 53.1
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 1.7e-88 330.5 314 56.1
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 3.8e-88 329.3 312 54.5
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 1.4e-87 327.4 377 48.3
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 5.7e-84 315.5 313 53.7
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 7.4e-84 315.1 349 51.0
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.4e-82 310.8 334 50.9
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 2.6e-81 306.6 246 61.4
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.5e-79 300.1 326 49.1
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 9.4e-79 298.1 244 59.8
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 1.8e-77 293.9 307 52.8
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 6.7e-77 292.0 307 49.5
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 5.9e-73 278.9 362 44.5
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.7e-70 269.2 267 53.2
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 6.1e-70 268.9 361 44.6
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 5.2e-69 265.8 199 61.8
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.4e-66 257.7 319 45.8
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 4.1e-66 256.1 322 42.5
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 2.3e-64 250.4 331 42.6
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.9e-64 250.0 329 43.8
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 6.5e-64 248.8 286 46.2
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 5.4e-58 229.2 348 40.8
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 3.5e-57 226.5 316 39.9
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 7.5e-52 208.8 159 60.4
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.7e-48 197.6 250 43.2
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 3.6e-46 189.9 137 63.5
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 3.7e-43 179.9 179 53.6
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 3.2e-42 176.8 188 51.1
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.9e-39 167.5 315 34.9
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 1.1e-34 151.8 401 29.4
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 8.6e-32 142.1 163 45.4
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 8.1e-30 135.6 311 32.8
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.9e-23 114.4 170 41.2
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 5.3e-21 106.3 70 68.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 4.6e-17 93.2 99 48.5
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 2.1e-14 84.3 137 38.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.3e-11 75.1 151 31.8
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.8e-08 64.7 62 51.6
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.8e-08 64.7 62 51.6
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.3e-08 64.3 190 31.1
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-08 63.9 173 32.9
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-08 63.9 173 32.9
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 6.7e-08 62.8 173 32.4
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 6.7e-08 62.8 198 29.3
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.1e-07 62.0 151 31.8
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 1.1e-07 62.0 132 34.1
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.5e-07 61.6 246 26.0
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.9e-07 61.2 172 32.0
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 2.5e-07 60.8 153 34.6
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 5.6e-07 59.7 236 28.0
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 5.6e-07 59.7 188 30.9
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 7.4e-07 59.3 217 28.1
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 9.6e-07 58.9 184 31.5
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.3e-06 58.5 242 27.7
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.3e-06 58.5 242 27.7
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.3e-06 58.5 179 31.3
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 1.6e-06 58.2 178 29.2
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.6e-06 58.2 199 30.2
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 2.1e-06 57.8 175 31.4
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 2.8e-06 57.4 179 30.7
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 3.7e-06 57.0 191 29.8
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 4.8e-06 56.6 179 29.6
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 4.8e-06 56.6 189 30.2
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 6.2e-06 56.2 166 31.9
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 8.1e-06 55.8 225 29.3
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 8.1e-06 55.8 191 29.3
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 8.1e-06 55.8 179 29.6


User provided reference genes

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