Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.3e-176 621.7 340 100.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.6e-112 409.5 341 70.4
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.6e-98 362.5 332 65.7
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.8e-95 352.4 341 60.7
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.1e-94 350.9 347 59.1
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.6e-93 347.1 342 61.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 8.7e-92 341.3 343 60.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.3e-91 339.3 342 59.6
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.6e-88 329.7 345 56.5
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 8.4e-87 324.7 338 60.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.5e-86 323.2 341 58.4
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.5e-86 322.0 342 57.9
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.5e-83 313.9 348 57.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-83 313.9 341 56.3
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.5e-83 313.9 341 56.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 9.6e-83 311.2 341 56.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.6e-82 310.5 345 52.2
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 6.2e-82 308.5 341 56.0
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.8e-81 307.0 345 51.6
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.1e-81 306.2 343 56.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.1e-81 305.8 345 52.5
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.1e-81 305.8 345 51.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.6e-80 303.1 345 51.6
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 7.6e-80 301.6 326 53.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.7e-79 300.4 346 52.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.8e-79 299.3 345 51.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.8e-79 299.3 345 51.0
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 5.0e-79 298.9 340 50.6
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.1e-78 297.7 345 51.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-78 296.6 345 51.0
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.2e-78 296.2 342 55.0
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.5e-78 295.4 337 51.0
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.5e-78 295.4 345 50.7
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.5e-78 295.4 345 50.7
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 7.1e-78 295.0 345 50.7
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 7.1e-78 295.0 345 51.0
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 4.6e-77 292.4 345 51.6
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-77 292.4 345 50.4
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.6e-77 292.4 345 49.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 6.1e-77 292.0 335 51.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.3e-76 290.8 345 49.0
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.3e-76 290.0 345 51.9
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.0e-76 289.7 345 49.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 6.7e-76 288.5 345 49.3
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.1e-75 287.7 345 48.4
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.5e-75 287.3 345 49.0
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.5e-75 287.3 337 50.1
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.9e-75 287.0 345 49.3
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.9e-75 287.0 323 49.8
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 7.4e-75 285.0 341 53.7
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 7.4e-75 285.0 335 50.1
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.4e-75 285.0 345 49.6
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.3e-74 284.3 345 49.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 3.7e-74 282.7 345 49.6
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 8.2e-74 281.6 335 50.7
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.4e-73 280.0 343 47.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 3.1e-73 279.6 345 47.0
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.1e-73 279.3 345 48.4
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.3e-73 278.9 336 53.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 6.9e-73 278.5 345 48.4
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.0e-73 278.1 319 52.0
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.2e-72 277.7 315 50.5
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-72 277.3 336 54.2
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.0e-72 276.9 354 48.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 2.0e-72 276.9 345 48.1
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.6e-72 276.6 328 50.9
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.4e-72 276.2 345 48.4
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.9e-72 275.4 325 51.1
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 2.9e-71 273.1 345 48.7
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.8e-71 272.7 343 47.2
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 5.0e-71 272.3 337 49.6
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.9e-70 270.4 345 48.4
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.5e-70 270.0 345 47.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.2e-70 269.6 345 47.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.4e-70 268.1 341 49.3
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 9.4e-70 268.1 345 47.0
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 6.1e-69 265.4 336 52.7
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 6.1e-69 265.4 345 46.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.9e-69 265.0 340 46.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.3e-68 263.5 329 49.2
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.1e-68 262.3 345 45.2
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.8e-68 261.5 345 44.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 5.7e-67 258.8 341 46.6
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.7e-66 257.3 341 46.0
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 2.2e-66 256.9 345 44.6
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 4.1e-65 252.7 327 48.6
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.1e-65 252.7 345 45.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 5.3e-65 252.3 325 48.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-64 251.1 345 45.2
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.0e-64 250.4 345 45.8
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.6e-64 250.0 346 44.8
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.3e-63 247.7 323 45.2
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 2.9e-63 246.5 319 46.7
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.5e-63 245.4 346 46.2
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.5e-63 245.4 346 46.2
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.9e-62 243.8 345 45.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.2e-62 242.7 341 45.7
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 9.4e-62 241.5 289 49.8
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.7e-61 240.0 345 42.6
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.7e-61 240.0 345 44.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.0e-60 236.5 394 41.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 3.0e-60 236.5 329 45.6
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.9e-60 236.1 339 44.8
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 6.7e-60 235.3 328 44.2
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.5e-59 234.2 345 42.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.4e-59 231.9 341 41.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.3e-58 231.1 286 51.0
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.3e-58 231.1 320 45.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.3e-58 228.8 346 43.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 8.2e-58 228.4 323 44.0
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.1e-57 226.5 345 41.7
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 9.1e-57 224.9 332 51.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.5e-56 222.6 316 43.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 5.9e-56 222.2 342 43.0
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.3e-55 221.1 328 44.2
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.5e-55 218.8 293 46.4
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 8.5e-55 218.4 338 41.7
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 7.2e-54 215.3 340 41.8
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-53 214.5 332 40.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.6e-53 214.2 312 45.2
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.1e-53 213.8 292 51.7
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.6e-53 213.0 345 39.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.7e-53 212.6 326 41.4
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.0e-52 211.5 345 42.6
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.8e-52 208.4 337 40.9
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.1e-51 208.0 329 43.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.1e-51 208.0 345 40.6
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.0e-51 207.2 345 39.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 3.3e-51 206.5 345 40.6
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.7e-50 204.1 261 44.1
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-50 203.8 289 43.6
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 7.0e-49 198.7 333 48.9
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.6e-48 197.6 320 40.6
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.0e-47 194.9 316 46.8
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.2e-47 193.7 280 43.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.9e-47 193.4 289 41.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 5.5e-46 189.1 345 38.0
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-45 187.6 287 41.1
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-45 187.2 258 45.7
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.7e-45 186.8 281 51.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.7e-45 186.8 281 51.2
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 3.6e-45 186.4 345 38.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.0e-44 184.9 198 52.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.0e-44 183.0 258 45.3
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-43 180.6 288 42.4
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.4e-43 179.5 345 35.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.3e-42 177.9 323 36.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.7e-42 176.4 316 36.7
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 3.7e-42 176.4 262 43.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.1e-41 174.9 294 40.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.9e-38 164.1 138 68.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.4e-36 157.9 345 34.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.5e-35 154.5 293 35.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.7e-34 149.8 342 35.1
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.4e-33 147.1 333 42.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 7.0e-33 145.6 240 39.2
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.2e-32 144.8 200 42.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.8e-31 139.8 288 36.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.5e-30 137.9 139 54.7
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.2e-29 134.8 158 51.3
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.8e-28 131.0 233 37.8
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.0e-28 130.2 345 31.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.2e-28 129.4 219 37.9
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 8.9e-28 128.6 171 43.9
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.4e-27 126.3 296 33.4
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.3e-23 114.8 330 27.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 3.9e-23 113.2 320 30.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.3e-20 104.0 327 27.5
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 9.2e-17 92.0 177 34.5
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.6e-16 89.7 172 39.0
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.3e-15 88.2 100 58.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 6.2e-13 79.3 100 55.0
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 5.2e-12 76.3 55 70.9
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.4e-11 73.2 50 74.0
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 4.3e-06 56.6 105 44.8


User provided reference genes

Program Settings