Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 0.0e+00 1169.5 586 100.0
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 4.8e-311 1070.5 586 90.4
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 7.0e-307 1056.6 586 89.6
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.5e-304 1048.9 587 88.6
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 2.5e-304 1048.1 587 88.6
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 7.2e-304 1046.6 586 89.1
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 3.6e-303 1044.3 586 88.7
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 3.0e-302 1041.2 586 88.1
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 3.0e-302 1041.2 586 87.9
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 4.0e-302 1040.8 587 88.2
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 8.8e-302 1039.6 588 87.9
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 3.9e-289 997.7 540 91.5
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 3.4e-285 984.6 586 82.9
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 2.1e-250 869.0 587 72.6
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.5e-248 862.8 591 72.1
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 9.6e-248 860.1 588 70.7
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.3e-247 859.8 591 71.9
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 2.8e-247 858.6 591 71.7
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 2.8e-247 858.6 584 71.9
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 6.9e-246 854.0 553 73.8
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 9.0e-246 853.6 586 71.5
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 9.0e-246 853.6 590 70.8
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.6e-245 852.0 573 71.6
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 7.6e-245 850.5 588 70.9
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 9.9e-245 850.1 554 74.0
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 2.9e-244 848.6 586 70.8
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 3.8e-244 848.2 587 69.5
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 2.4e-243 845.5 587 69.8
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 5.5e-243 844.3 585 71.8
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 3.5e-242 841.6 590 71.5
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 5.1e-241 837.8 586 69.3
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 5.1e-241 837.8 552 74.1
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.5e-240 835.5 616 66.4
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 4.3e-240 834.7 551 72.4
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 7.4e-240 833.9 587 68.8
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.3e-239 833.2 538 74.7
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 4.8e-239 831.2 589 68.8
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.1e-238 830.1 554 72.0
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 3.1e-238 828.6 591 69.4
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 3.1e-238 828.6 667 62.4
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.3e-238 827.8 593 68.5
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 5.3e-238 827.8 586 69.3
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 6.9e-238 827.4 589 68.9
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 9.0e-238 827.0 586 68.6
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.2e-237 826.6 592 67.7
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.2e-237 826.6 585 69.4
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 1.2e-237 826.6 549 72.7
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.5e-237 826.2 592 67.9
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.6e-237 825.5 601 67.2
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 4.5e-237 824.7 553 71.1
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 7.6e-237 823.9 589 67.7
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.4e-235 819.7 589 68.3
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.2e-235 818.5 611 66.4
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 5.5e-235 817.8 551 71.0
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 9.3e-235 817.0 576 69.4
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.6e-234 816.2 590 68.1
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 6.0e-234 814.3 595 66.7
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 3.0e-233 812.0 554 70.9
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.9e-232 809.3 547 70.2
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 2.5e-232 808.9 581 68.5
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 4.3e-232 808.1 547 70.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 1.1e-230 803.5 549 70.5
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 6.9e-230 800.8 595 67.4
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 4.2e-227 791.6 553 68.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 7.9e-226 787.3 555 68.6
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 1.8e-225 786.2 545 69.4
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 5.7e-224 781.2 631 62.3
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 5.9e-221 771.2 584 65.6
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.1e-216 756.9 557 66.1
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 3.7e-215 751.9 552 65.4
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 6.3e-215 751.1 551 64.6
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.1e-214 750.4 551 66.4
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.4e-214 750.0 593 64.1
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 3.1e-214 748.8 501 71.3
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 1.1e-211 740.3 557 65.7
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 2.7e-210 735.7 557 66.1
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 4.7e-210 734.9 575 64.0
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 4.7e-210 734.9 531 68.5
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 3.3e-208 728.8 510 69.8
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 2.7e-202 709.1 512 68.8
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.8e-201 706.4 472 72.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.3e-201 706.1 586 60.8
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 1.7e-199 699.9 486 70.2
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 4.2e-195 685.3 472 68.2
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 7.0e-190 667.9 585 60.5
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.3e-188 663.7 385 86.8
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 4.7e-186 655.2 572 55.6
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 2.3e-185 652.9 579 57.7
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.5e-184 650.2 577 54.6
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 5.2e-177 625.2 539 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 3.9e-172 609.0 541 56.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 2.5e-163 579.7 418 67.2
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.2e-162 577.4 550 54.7
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 9.5e-155 551.2 380 71.1
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.4e-145 520.8 565 52.7
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.5e-144 517.3 319 76.5
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 4.6e-141 505.8 320 73.1
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 1.3e-140 504.2 309 76.1
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.6e-138 497.3 333 71.2
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 5.8e-136 488.8 449 57.2
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.1e-134 484.6 547 49.5
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.9e-126 457.2 570 42.3
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 4.0e-121 439.5 423 56.5
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 9.3e-118 428.3 338 63.6
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 9.1e-105 385.2 364 52.5
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.7e-98 364.4 626 35.1
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 4.2e-94 349.7 206 81.6
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.8e-81 307.8 241 64.3
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.9e-78 297.7 244 59.4
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 7.8e-56 222.6 140 72.9
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.8e-53 214.2 160 61.9
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 8.1e-45 186.0 158 59.5
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.4e-41 175.3 130 65.4
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 3.2e-41 174.1 130 61.5
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 3.2e-33 147.5 97 69.1
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 6.2e-29 133.3 160 46.2
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 2.4e-28 131.3 85 71.8
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 4.9e-26 123.6 100 53.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.0e-23 114.4 69 76.8
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 7.6e-19 99.8 64 67.2
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 8.4e-18 96.3 105 52.4
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 4.6e-16 90.5 68 66.2
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 9.6e-14 82.8 85 45.9
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.5e-11 75.5 42 83.3
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 1.1e-09 69.3 71 53.5
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 2.4e-09 68.2 80 47.5
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 2.5e-06 58.2 61 52.5


User provided reference genes

Program Settings